| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 15,157,746 – 15,157,862 |
| Length | 116 |
| Max. P | 0.770640 |
| Location | 15,157,746 – 15,157,862 |
|---|---|
| Length | 116 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 79.59 |
| Mean single sequence MFE | -24.77 |
| Consensus MFE | -14.45 |
| Energy contribution | -15.34 |
| Covariance contribution | 0.89 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.25 |
| Structure conservation index | 0.58 |
| SVM decision value | 0.53 |
| SVM RNA-class probability | 0.770640 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15157746 116 + 22224390 CUAGACAAAGAAAAGAGGGUGGACCCAAUUG----CUCUUGAUUACUGCUAGCAAUGGCUAGCCUAUGCCUAUGCCUAGCCUAUAAUUUCUAUAAAAACUAGAAUAGUAAUAGUACCCAU ....((.((((.((..(((....)))..)).----.)))).(((((((((((((..(((........)))..)).))))).......(((((.......))))).)))))).))...... ( -24.60) >DroSec_CAF1 8741 103 + 1 AUUCUUAAAAAAAAGAGGGUGGACCCAAUUGUCAGAUCUUGAUUACUGCUAGCAAUGCC-----------------UAGCCUAUAAUCUCUAUAAAAACUAGCAUAGUAGUAGCACCCAU ..((((......))))((((((((......))).........(((((((((....(((.-----------------(((..((((.....))))....)))))))))))))))))))).. ( -23.30) >DroSim_CAF1 8779 102 + 1 AUUCUUAAAA-AAAGAGGGUGGACCCAAUAGUCAGAUCUUGAUUACUGCUAGCAAUGGC-----------------UAGCCUAUAAUCUCUAUAAAAACUAGCAUAGUAGUAGCACCCAU ..((((....-.))))((((((((......))).........(((((((((......((-----------------(((..((((.....))))....))))).)))))))))))))).. ( -26.40) >consensus AUUCUUAAAAAAAAGAGGGUGGACCCAAUUGUCAGAUCUUGAUUACUGCUAGCAAUGGC_________________UAGCCUAUAAUCUCUAUAAAAACUAGCAUAGUAGUAGCACCCAU ................((((((((......)))........(((((((((((....(((...................)))((((.....))))....)))))..))))))..))))).. (-14.45 = -15.34 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:58:54 2006