Locus 5887

Sequence ID X_DroMel_CAF1
Location 15,157,623 – 15,157,716
Length 93
Max. P 0.643211
window9559

overview

Window 9

Location 15,157,623 – 15,157,716
Length 93
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 75.05
Mean single sequence MFE -37.58
Consensus MFE -17.71
Energy contribution -19.19
Covariance contribution 1.48
Combinations/Pair 1.14
Mean z-score -1.81
Structure conservation index 0.47
SVM decision value 0.23
SVM RNA-class probability 0.643211
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15157623 93 + 22224390
CUGCCUGGUGCUCGGACAGCGUAUGU------UGGCCGUAGCCACCGUUGC------GGGCAAACG----GAGAAGAGU--GCGACGGAAGAGC---GUCCAGGAAG-AG-----CAAAU
((.((((((((((...(..(((((.(------((.(((((((....)))))------)).)))...----.......))--)))..)...))))---).))))).))-..-----..... ( -35.80)
>DroSec_CAF1 8618 93 + 1
CUGCCUGGUGCUCGGACAGCGGAUGG------UGGCCAUAGCCACCGUUGC------GGGCAAAAG----GAGAAGAGU--GCGACGGAAGAGC---GUCCAGGAAG-AG-----CAAGU
((.((((((((((...(.......((------((((....))))))(((((------(..(.....----.....)..)--))))))...))))---).))))).))-..-----..... ( -36.60)
>DroSim_CAF1 8656 93 + 1
CUGCCUGGUGCUCGGACAGCGGAUGG------UGGCCAUAGCCACCGUUGC------GGGCAAAAG----GAGAAGAGU--GCGACGGAAGAGC---GUCCAGGAAG-AG-----CAAGU
((.((((((((((...(.......((------((((....))))))(((((------(..(.....----.....)..)--))))))...))))---).))))).))-..-----..... ( -36.60)
>DroYak_CAF1 8130 93 + 1
UUGCCUGGUUUUUGGACAGCGGAUGG------UGGCCAUAGCCACCGUUGC------GGGCAAGAA----GAGAAGAGU--GCGACGGAAGAGC---GUCCAGGAAG-AG-----CAAGU
((((((...((((((((.(((.((((------((((....)))))))))))------.........----.........--((..(....).))---))))))))))-.)-----))).. ( -34.10)
>DroAna_CAF1 67162 120 + 1
GUGUCUGGUCUUGAGGGAGCAAGUGGCUCCUCUGGCCACUGCCUCCGUCACCGUAGGGAGGAAGGGGUCGAAAAACAGUCGCCGAGGCAAGAGCAGUGUCCAGCAGGGAGCGAUACCAGU
(((((((.(((....))).))....((((((((((.((((((((((.((.((....))..)).)))).............((....))....)))))).))))..))))))))))).... ( -44.80)
>consensus
CUGCCUGGUGCUCGGACAGCGGAUGG______UGGCCAUAGCCACCGUUGC______GGGCAAAAG____GAGAAGAGU__GCGACGGAAGAGC___GUCCAGGAAG_AG_____CAAGU
...(((((.((((....................(((....))).(((((((((..........................)))))))))..)))).....)))))................ (-17.71 = -19.19 +   1.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:58:53 2006