Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 15,154,362 – 15,154,453 |
Length | 91 |
Max. P | 0.985929 |
Location | 15,154,362 – 15,154,453 |
---|---|
Length | 91 |
Sequences | 3 |
Columns | 91 |
Reading direction | forward |
Mean pairwise identity | 83.97 |
Mean single sequence MFE | -20.73 |
Consensus MFE | -18.27 |
Energy contribution | -18.17 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.11 |
Mean z-score | -2.58 |
Structure conservation index | 0.88 |
SVM decision value | 1.85 |
SVM RNA-class probability | 0.979946 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15154362 91 + 22224390 GUUGUUGGUUGUGGACCGCUGCUUUCAUGUACAUAUGUAAUUGCAAGUGUCCCAUUUUGCAAUUACACUUCUACAUGCACAUACAUAUACG ((...((..((((............((((((.(..((((((((((((........))))))))))))..).))))))))))..))...)). ( -23.30) >DroEre_CAF1 5216 78 + 1 -----------UGGCCCGCAGCGUUUAUGUACAUAUGUAAUUGCAAGUGUCCCAUUUUGCAAUUACAUUUCUAUAUGC--AUACAUAUAUG -----------..((.....))((.((((((...(((((((((((((........)))))))))))))...)))))).--..))....... ( -18.60) >DroYak_CAF1 5041 80 + 1 -----------UGGCCCGAAGCGUUUAUGUACAUAUGUAAUUGCAAGUGUCCCAUUUUGCAAUUACAUUUCUAUAUGCACAUACAUAUAUG -----------..((.....))((.((((((...(((((((((((((........)))))))))))))...)))))).))........... ( -20.30) >consensus ___________UGGCCCGCAGCGUUUAUGUACAUAUGUAAUUGCAAGUGUCCCAUUUUGCAAUUACAUUUCUAUAUGCACAUACAUAUAUG .........................((((((...(((((((((((((........)))))))))))))...)))))).............. (-18.27 = -18.17 + -0.11)
Location | 15,154,362 – 15,154,453 |
---|---|
Length | 91 |
Sequences | 3 |
Columns | 91 |
Reading direction | reverse |
Mean pairwise identity | 83.97 |
Mean single sequence MFE | -21.90 |
Consensus MFE | -18.61 |
Energy contribution | -18.83 |
Covariance contribution | 0.23 |
Combinations/Pair | 1.10 |
Mean z-score | -3.02 |
Structure conservation index | 0.85 |
SVM decision value | 2.02 |
SVM RNA-class probability | 0.985929 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15154362 91 - 22224390 CGUAUAUGUAUGUGCAUGUAGAAGUGUAAUUGCAAAAUGGGACACUUGCAAUUACAUAUGUACAUGAAAGCAGCGGUCCACAACCAACAAC ......(((.(((.((((((.(.((((((((((((..........)))))))))))).).))))))...)))..(((.....))).))).. ( -26.80) >DroEre_CAF1 5216 78 - 1 CAUAUAUGUAU--GCAUAUAGAAAUGUAAUUGCAAAAUGGGACACUUGCAAUUACAUAUGUACAUAAACGCUGCGGGCCA----------- ..((((((...--.))))))...((((((((((((..........))))))))))))............((.....))..----------- ( -17.40) >DroYak_CAF1 5041 80 - 1 CAUAUAUGUAUGUGCAUAUAGAAAUGUAAUUGCAAAAUGGGACACUUGCAAUUACAUAUGUACAUAAACGCUUCGGGCCA----------- ........((((((((((......(((((((((((..........)))))))))))))))))))))....(....)....----------- ( -21.50) >consensus CAUAUAUGUAUGUGCAUAUAGAAAUGUAAUUGCAAAAUGGGACACUUGCAAUUACAUAUGUACAUAAACGCUGCGGGCCA___________ ........((((((((((......(((((((((((..........)))))))))))))))))))))......................... (-18.61 = -18.83 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:58:50 2006