Locus 5883

Sequence ID X_DroMel_CAF1
Location 15,153,861 – 15,153,970
Length 109
Max. P 0.804895
window9554

overview

Window 4

Location 15,153,861 – 15,153,970
Length 109
Sequences 5
Columns 118
Reading direction forward
Mean pairwise identity 84.25
Mean single sequence MFE -41.16
Consensus MFE -28.95
Energy contribution -28.11
Covariance contribution -0.84
Combinations/Pair 1.26
Mean z-score -2.04
Structure conservation index 0.70
SVM decision value 0.63
SVM RNA-class probability 0.804895
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15153861 109 + 22224390
UUCUGAACCGCAUAAUUGUAGGGUGCACAGGAUAGUUGCAAGUGUACCGCUCGCUGCUGGCAGCUGGCAGCGACGCCGACAGCGCUGCCAGCAGAGUGCGUAAAAUACA---------
........(((((....(.(((((((((..(.......)..))))))).))).(((((((((((((((......)))).....))))))))))).))))).........--------- ( -43.50)
>DroSec_CAF1 4814 102 + 1
UUCUGAACGGCAUAAUUGUAGGGUGUGCAGGAUAGUUGCAAGUGUACCGCUCGCUGCUGGC-------ACCGCUGUCGGCGUCGCUGCCAGCAGAGUGCGUAAAAUGCA---------
.........((((........((((..(..(.......)..)..))))((.(.((((((((-------(.((.((....)).)).))))))))).).)).....)))).--------- ( -35.60)
>DroSim_CAF1 4843 102 + 1
UUCUGAACGGCAUAAUUGUAGGGUGCGCAGGAUAGUUGCAAGUGUACCGCUCGCUGCUGGC-------AGCGCUGUCGGCGUCGCUGCCAGCAGAGUGCGUAAAAUGCA---------
.........((((........(((((((..(.......)..)))))))((.(.((((((((-------((((.((....)).)))))))))))).).)).....)))).--------- ( -45.10)
>DroEre_CAF1 4713 111 + 1
UUCUGCACCGAAUAAUUGUAGGGUGCACAGAAUAGUUGCAAGUGUACCGCUCGCUGUUUGC-------AGCGCAGUCGGCGUCGCUGCCAGCAGAGUGCGUAAAAUGCAGGCGAGCAG
..(((((.........)))))(((((((.............)))))))(((((((...(((-------((((((.((((((....))))....)).)))))....))))))))))).. ( -41.62)
>DroYak_CAF1 4535 111 + 1
UUCUGCACCGAAUAAUUGUAGGGUGCAUAGAAUAGUUGCAAGUGUACCGCUUGCUGUUGGC-------AGCGCAGUCGGCGUCGCUGCUAGCAGAGUGCGUAAAAUGCAGGCGAGAAG
(((((((((............)))))........((((((....(((((((..((((((((-------((((..(....)..)))))))))))))))).)))...)))).)).)))). ( -40.00)
>consensus
UUCUGAACCGCAUAAUUGUAGGGUGCACAGGAUAGUUGCAAGUGUACCGCUCGCUGCUGGC_______AGCGCAGUCGGCGUCGCUGCCAGCAGAGUGCGUAAAAUGCA_________
................((((.(((((((.............)))))))((.(.((((((((.......((((..(....)..)))))))))))).).))......))))......... (-28.95 = -28.11 +  -0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:58:48 2006