Locus 5880

Sequence ID X_DroMel_CAF1
Location 15,146,830 – 15,146,936
Length 106
Max. P 0.924828
window9547

overview

Window 7

Location 15,146,830 – 15,146,936
Length 106
Sequences 5
Columns 106
Reading direction forward
Mean pairwise identity 98.30
Mean single sequence MFE -29.60
Consensus MFE -28.60
Energy contribution -28.80
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.48
Structure conservation index 0.97
SVM decision value 1.16
SVM RNA-class probability 0.924828
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15146830 106 + 22224390
CACUUGGCCAACAAUUGCACAGACAACAAUUUGACAUCAAGUGCAAGGGUGCAGUGCACUGUGCUAACUCAAUCAAGGCCAACAAAUCGCUGCAUCGGCAAUUGCG
...((((((.....((((((.(....)...(((....))))))))).((..(((....)))..))...........)))))).....((((((....)))...))) ( -28.00)
>DroSec_CAF1 58034 106 + 1
CACUUGGCCAACAAUUGCACAGACAACAAUUUGACAUCAAGUGCAAGGGUGCAGUGCACUGUGCUAACUCAAUCAAGGCCAGCAAAUCGCUGCAUCGGCAAUUGGC
......(((.....((((((.(....)...(((....))))))))).(((((((((.....((((..((......))...))))...))))))))))))....... ( -29.70)
>DroSim_CAF1 49282 106 + 1
CACUUGGCCAACAAUUGCACAGACAACAAUUUGACAUCAAGUGCAAGGGUGCAGUGCACUGUGCUAACUCAAUCAAGGCCAGCAAAUCGCUGCAUCGGCAAUUGGC
......(((.....((((((.(....)...(((....))))))))).(((((((((.....((((..((......))...))))...))))))))))))....... ( -29.70)
>DroEre_CAF1 64465 106 + 1
CACUUGGCCAACAAUUGCACAGACAACAAUUUGACAUCAAGUGCAAGGGUGCAGUGCACUGUGCUAACUCAAUCAAGGCCAGCAAAUCGCUGCAUCGGCAAUUGGG
..((..(((.....((((((.(....)...(((....))))))))).(((((((((.....((((..((......))...))))...))))))))))))....)). ( -30.00)
>DroYak_CAF1 65567 106 + 1
CACUUGGCCAACAAUUGCACAGACAACAAUUUGACAUCAAGUGCAAGGGUGCAGUGCACUGUGCUAACUCAAUCAAGGCCAGCGAAUCGCUGCAUCGGCAAUUGGG
..((..(((.....((((((.(....)...(((....))))))))).((((((((((.(((.(((...........)))))).)...))))))))))))....)). ( -30.60)
>consensus
CACUUGGCCAACAAUUGCACAGACAACAAUUUGACAUCAAGUGCAAGGGUGCAGUGCACUGUGCUAACUCAAUCAAGGCCAGCAAAUCGCUGCAUCGGCAAUUGGG
......(((.....((((((.(....)...(((....))))))))).(((((((((..(((.(((...........)))))).....))))))))))))....... (-28.60 = -28.80 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:58:42 2006