Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,655,857 – 1,655,950 |
Length | 93 |
Max. P | 0.589436 |
Location | 1,655,857 – 1,655,950 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 80.80 |
Mean single sequence MFE | -17.85 |
Consensus MFE | -12.99 |
Energy contribution | -12.77 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.06 |
Mean z-score | -1.25 |
Structure conservation index | 0.73 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.589436 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1655857 93 + 22224390 ---------------------------AUUUUCGUUGGCAUGCUUUUAUCUGUUUAGCGUGUUUAUUUGCACAGGAAACUCAUUACGCAAAUCUACCCCAAAGCUAUACGUAAAUCCUUU ---------------------------((((.((((((((((((...........)))))((..((((((..((....))......))))))..))......)))).))).))))..... ( -16.60) >DroPse_CAF1 40900 117 + 1 AGUACACACACACACAAACACACAUACAUAUGC---AGAAUGUUUUUAUCUGUGUAGCGUGUUUAUUUGCACAGGAAACUCAUUACGCAAAUCUUCCCUAAAGCUAUGCGUAAAUCCUUU ((((.((((.((((((.........((((....---...)))).......))))).).)))).)))).....((....))..(((((((...(((.....)))...)))))))....... ( -19.89) >DroSec_CAF1 20721 93 + 1 ---------------------------AUUUUCGUUGGCAUGCUUUUAUCUGUUUAGCGUGUUUAUUUGCACAGGAAACUCAUUACGCAAAUCUACCCCAAAGCUAUACGUAAAUCCUUU ---------------------------((((.((((((((((((...........)))))((..((((((..((....))......))))))..))......)))).))).))))..... ( -16.60) >DroSim_CAF1 9966 93 + 1 ---------------------------AUUUUCGUUGGCAUGCUUUUAUCUGUUUAGCGUGUUUAUUUGCACAGGAAACUCAUUACGCAAAUCUACCCCAAAGCUAUACGUAAAUCCUUU ---------------------------((((.((((((((((((...........)))))((..((((((..((....))......))))))..))......)))).))).))))..... ( -16.60) >DroYak_CAF1 21279 93 + 1 ---------------------------AUUUUCGUUGGCAUGCUUUUAUCUGUUUAGCGUGUUUAUUUGCACAGGAAACUCAUUACGCAAAUCUACCCCAAAGCUAUACGUAAAUCCUUU ---------------------------((((.((((((((((((...........)))))((..((((((..((....))......))))))..))......)))).))).))))..... ( -16.60) >DroPer_CAF1 42824 117 + 1 AGUACACACACAUACAAACACACAUACAUAUGC---AGAAUGUUUUUAUCUGUAUAGCGUGUUUAUUUGCACAGGAAACUCAUUACGCAAAUCUUCCCUAAAGCUAUGCGUAAAUCCUUU ............................(((((---(((.........))))))))..((((......))))((....))..(((((((...(((.....)))...)))))))....... ( -20.80) >consensus ___________________________AUUUUCGUUGGCAUGCUUUUAUCUGUUUAGCGUGUUUAUUUGCACAGGAAACUCAUUACGCAAAUCUACCCCAAAGCUAUACGUAAAUCCUUU .........................................(..(((((..((.((((((((......))))((....))......................)))).)))))))..)... (-12.99 = -12.77 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:38 2006