| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 15,146,071 – 15,146,180 |
| Length | 109 |
| Max. P | 0.845266 |
| Location | 15,146,071 – 15,146,180 |
|---|---|
| Length | 109 |
| Sequences | 3 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 96.94 |
| Mean single sequence MFE | -30.13 |
| Consensus MFE | -30.31 |
| Energy contribution | -29.87 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.74 |
| Structure conservation index | 1.01 |
| SVM decision value | 0.77 |
| SVM RNA-class probability | 0.845266 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15146071 109 - 22224390 CUUCUCCCUCGCUUCCGUAGUCUGUCUCGUUCGCGCUUUCUGUUUGUUUGCUGCCGCUUACAAUGUAAGUGCGCGCGUAUCGAUAACUGCCGGCACCACCCAACACCCA ..........(((...(((((.((((.(((.(((((((.(...((((..((....))..)))).).))))))).)))....))))))))).)))............... ( -28.70) >DroSec_CAF1 57306 108 - 1 CUUCUCCUUCGCUUCCGCAGUCUGUCUCGUUCGCGCUUUCUGUUUGUUUGCUGC-GCUUACAAUGUAAGUGCGCGCGUAUCGAUAACUGCCGGCACCGCCCAACACCCA ..........(((...(((((.((((.....(((((.....((......)).((-((((((...)))))))))))))....))))))))).)))............... ( -31.00) >DroSim_CAF1 48559 109 - 1 CUUCUCCCUCGCUUCCGUAGUCUGUCUCGCUCGCGCUUUCUGUUUGUUUGCUGCCGCUUACAAUGUAAGUGCGCGCGUAUCGAUAACUGCCGGCACCGCCCAACACCCA ..........(((...(((((.((((.(((.(((((((.(...((((..((....))..)))).).))))))).)))....))))))))).)))............... ( -30.70) >consensus CUUCUCCCUCGCUUCCGUAGUCUGUCUCGUUCGCGCUUUCUGUUUGUUUGCUGCCGCUUACAAUGUAAGUGCGCGCGUAUCGAUAACUGCCGGCACCGCCCAACACCCA ..........(((...(((((.((((.(((.(((((((.(...((((..((....))..)))).).))))))).)))....))))))))).)))............... (-30.31 = -29.87 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:58:41 2006