Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 15,145,586 – 15,145,729 |
Length | 143 |
Max. P | 0.995350 |
Location | 15,145,586 – 15,145,689 |
---|---|
Length | 103 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 73.84 |
Mean single sequence MFE | -36.65 |
Consensus MFE | -22.42 |
Energy contribution | -23.43 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.17 |
Mean z-score | -2.37 |
Structure conservation index | 0.61 |
SVM decision value | 2.57 |
SVM RNA-class probability | 0.995350 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15145586 103 - 22224390 AAAAAUA--------UAUUAGCAGCGCCCACGGCCGCC-UAAUCAAAUGGUUUUCGGUGGUU-UGGGGUGCUUAGUUGGU------GGCACAAGUGAAGCAAGUGCCGCA-AGUGCCACA .......--------...(((((((((((..(((((((-.((((....))))...)))))))-..)))))))..))))((------(((((..(((..((....))))).-.))))))). ( -42.50) >DroSim_CAF1 48037 98 - 1 AAAAAUA--------UAUUAGCAGCGCCCACGGCCUCC-UAAUCAAGUGGUUUUCGGUGGUU-UGGGGUGCUUAGUUGGU------GCCACAAGUGAAGCAAGUGCCGCA-AGUG----- .......--------((((((((((((((..((((.((-.((((....))))...)).))))-..)))))))..))))))------).(((..(((..((....))))).-.)))----- ( -29.20) >DroEre_CAF1 63298 86 - 1 AAAAAUA--------UAUUUGAAGCGCCCACGGCCGCCUUAAUCAAGUGAUUUUCGGUGGUG-UGGGGUGCUCAGUUG------------------------GUGCCACAA-GUGCCGCA .......--------...((((.((((((...((((((..((((....))))...)))))).-..))))))))))..(------------------------(..(.....-)..))... ( -32.60) >DroYak_CAF1 64277 118 - 1 AAAAAUACAUAUAUGUAUUAGCAGCGCCCACGGCCUCC-CAGUCAAGUGGUUUUCGGUGGUUUUGUGGUGCUUUGUUGUUGGUGGUGCGACAAGAGCCGCAAGUGCCACA-AGUGCCGCA ...((((((....)))))).((.(((((((((((....-..)))..))))......(((((((((((((..((((((((.......)))))))).)))))))).))))).-.)))).)). ( -42.30) >consensus AAAAAUA________UAUUAGCAGCGCCCACGGCCGCC_UAAUCAAGUGGUUUUCGGUGGUU_UGGGGUGCUUAGUUGGU______GCCACAAGUGAAGCAAGUGCCACA_AGUGCCGCA ......................(((((((..(((((((..((((....))))...)))))))...)))))))..............................(((.(((...))).))). (-22.42 = -23.43 + 1.00)
Location | 15,145,619 – 15,145,729 |
---|---|
Length | 110 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 85.94 |
Mean single sequence MFE | -36.00 |
Consensus MFE | -28.92 |
Energy contribution | -29.79 |
Covariance contribution | 0.87 |
Combinations/Pair | 1.10 |
Mean z-score | -2.63 |
Structure conservation index | 0.80 |
SVM decision value | 1.88 |
SVM RNA-class probability | 0.981310 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15145619 110 - 22224390 GUCGUCUCGUUGACGAAAAUAAAUCAAACGAAAUGUUGAUAAAAAUA--------UAUUAGCAGCGCCCACGGCCGCC-UAAUCAAAUGGUUUUCGGUGGUU-UGGGGUGCUUAGUUGGU .(((((.....)))))......(((((......((((((((......--------))))))))((((((..(((((((-.((((....))))...)))))))-..))))))....))))) ( -37.40) >DroSim_CAF1 48065 110 - 1 GUCGUCUCGUUGACGAAAAUAAACCAAACGAAAUGUUGAUAAAAAUA--------UAUUAGCAGCGCCCACGGCCUCC-UAAUCAAGUGGUUUUCGGUGGUU-UGGGGUGCUUAGUUGGU .(((((.....)))))......(((((......((((((((......--------))))))))((((((..((((.((-.((((....))))...)).))))-..))))))....))))) ( -36.40) >DroEre_CAF1 63315 109 - 1 GUCGUCUCGGUGACGAAAAUAAAUCAAGCAAAAUGCUGAUAAAAAUA--------UAUUUGAAGCGCCCACGGCCGCCUUAAUCAAGUGAUUUUCGGUGGUG-UGGGGUGCUCAGUUG-- .(((((.....)))))......((((.((.....)))))).......--------...((((.((((((...((((((..((((....))))...)))))).-..))))))))))...-- ( -37.60) >DroYak_CAF1 64316 119 - 1 GUCGUCUCGGUGACGAAAAUAAAUCAUGAAAAAUGCUGAUAAAAAUACAUAUAUGUAUUAGCAGCGCCCACGGCCUCC-CAGUCAAGUGGUUUUCGGUGGUUUUGUGGUGCUUUGUUGUU .(((((.....))))).((((((..........((((((((...(((....))).))))))))(((((((..(((.((-.(..(....)..)...)).)))..)).)))))))))))... ( -32.60) >consensus GUCGUCUCGGUGACGAAAAUAAAUCAAACAAAAUGCUGAUAAAAAUA________UAUUAGCAGCGCCCACGGCCGCC_UAAUCAAGUGGUUUUCGGUGGUU_UGGGGUGCUUAGUUGGU .(((((.....))))).................((((((((..............))))))))((((((..(((((((..((((....))))...)))))))...))))))......... (-28.92 = -29.79 + 0.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:58:40 2006