Locus 5877

Sequence ID X_DroMel_CAF1
Location 15,144,564 – 15,144,684
Length 120
Max. P 0.580206
window9543

overview

Window 3

Location 15,144,564 – 15,144,684
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 94.67
Mean single sequence MFE -47.38
Consensus MFE -36.94
Energy contribution -38.58
Covariance contribution 1.64
Combinations/Pair 1.03
Mean z-score -1.69
Structure conservation index 0.78
SVM decision value 0.09
SVM RNA-class probability 0.580206
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15144564 120 - 22224390
CGCAACCAGAUCCGGUGGCAGAGGGCGUCGGCGAUUGGUAGAAACUGUUCGCACCACUCCCACUCCCACUGGGCGCAUAGUCGCUGCCCAGCACCGAGCUCUCGUUCUCAUCCGGAUAGU
.........(((((((((..((((((.((((.(...(((((..(((((.(((.(((.............)))))).)))))..)))))...).))))))))))....))).))))))... ( -48.22)
>DroSec_CAF1 55764 120 - 1
CGCAACCAGAUCCGGUGGCAGAGGGCGUCGGCGAUUGGUAGAAGCUGUUCGCACCACUGCCACUCCCACUGGGCGCAUAGUCACUGCCCAGCACCGAGCUCUCGUUCUCAUCCGGAUAGU
.........(((((((((..((((((.((((.(...(((((..(((((.(((.(((.((.......)).)))))).)))))..)))))...).))))))))))....))).))))))... ( -48.90)
>DroSim_CAF1 47020 120 - 1
CGCAACCAGAUCCGGUGGCAGAGGGCGUCGGCGAUUGGUAGAAACUGUUCGCACCACUGCCACUCCCACUGGGCGCAUAGUCGCUGCCCAGCACCGAGCUCUCGUUCUCAUCCGGAUAGU
.........(((((((((..((((((.((((.(...(((((..(((((.(((.(((.((.......)).)))))).)))))..)))))...).))))))))))....))).))))))... ( -50.00)
>DroEre_CAF1 62287 120 - 1
CGCAACCGGAUCCGGCGGCAGAGGGCGUGGGCGAUUGAUAGAAACUGUUCUCACCACUGCCACUCCCACUGGGCGCAUAGUCGAUGCCAAGCACCGAGAUAUCAUUCUCAUCCGGAUAGU
.....((((((((((.((..((((((((((..((..(((((...))))).)).)))).))).))))).))))((((((.....))))...))...((((......))))))))))..... ( -41.30)
>DroYak_CAF1 63319 120 - 1
CGCAACCGGAUCCGGCGCCAGAGGGCGUGGGCGAUUGAUAGAAACUGUUCGCACCACUGCCACUCCCACUGGGCGCAUAGUCGCUGCCCAGCACCGAGCUCUCGUUCUCAUCCGGAUAGU
.....((((((..((.((..((((((((((((((...((((...)))))))).)))).))).)))....(((((((......)).))))))).))((((....))))..))))))..... ( -48.50)
>consensus
CGCAACCAGAUCCGGUGGCAGAGGGCGUCGGCGAUUGGUAGAAACUGUUCGCACCACUGCCACUCCCACUGGGCGCAUAGUCGCUGCCCAGCACCGAGCUCUCGUUCUCAUCCGGAUAGU
.........((((((.....((((((.((((.(...(((((..(((((.(((.(((.((.......)).)))))).)))))..)))))...).))))))))))........))))))... (-36.94 = -38.58 +   1.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:58:38 2006