Locus 5876

Sequence ID X_DroMel_CAF1
Location 15,143,615 – 15,143,732
Length 117
Max. P 0.656838
window9542

overview

Window 2

Location 15,143,615 – 15,143,732
Length 117
Sequences 4
Columns 117
Reading direction reverse
Mean pairwise identity 86.44
Mean single sequence MFE -17.90
Consensus MFE -13.50
Energy contribution -13.62
Covariance contribution 0.12
Combinations/Pair 1.00
Mean z-score -1.61
Structure conservation index 0.75
SVM decision value 0.26
SVM RNA-class probability 0.656838
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15143615 117 - 22224390
UGCUUGAAUGACACAAGCAAAAGCCGAAGCAAAUGAAAAGUCAAAGAAGUCCACGUUAUUUAUAUGCGAAUCCUAUCCAAGUGUCGCCUAUAAAUAAUUCAAAACACUACUAUAUAU
((((((.......))))))...((....))..............((.(((....((((((((((.((((...((.....))..)))).)))))))))).......))).))...... ( -19.50)
>DroSim_CAF1 46023 100 - 1
UAGUUGAAUGACAAAAGCAA-----------------AAGUCAAAGAAGUCCACGUUAUUUAUAUGCGAAUCCUAUCCAAGUGUCGCCUAUAAAUAAUUCAAAACACUACUAUAUAU
...((((.((((........-----------------..))))...........((((((((((.((((...((.....))..)))).))))))))))))))............... ( -16.40)
>DroEre_CAF1 61275 111 - 1
UGGUUGAAUGACUCAAGCAAAAGCAGAAGCAA-----AAGGCAAAGAAGUCCACAUUAUUUAUAUGCGAAUCCUAUCCAAGUGUCGCCUAUAAAUAAUUCAAAACACUAU-AUACAU
...(((((((((((..((....))....((..-----...))...).)))).....((((((((.((((...((.....))..)))).))))))))))))))........-...... ( -20.10)
>DroYak_CAF1 62339 110 - 1
UGGUUGAAUGACACAAGCAAAAGCACAAGCAA-----AAAACAAAGAA-UCCACGUUAUUUAUAUGCGAAUCCUAUCCAAGUGUCGCCUAUAAAUAAUUCAAAACACUAU-AUACAU
...((((((.......((....))........-----...........-.......((((((((.((((...((.....))..)))).))))))))))))))........-...... ( -15.60)
>consensus
UGGUUGAAUGACACAAGCAAAAGCAGAAGCAA_____AAGUCAAAGAAGUCCACGUUAUUUAUAUGCGAAUCCUAUCCAAGUGUCGCCUAUAAAUAAUUCAAAACACUAC_AUACAU
...((((((.............((....))..........................((((((((.((((...((.....))..)))).))))))))))))))............... (-13.50 = -13.62 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:58:37 2006