Locus 5875

Sequence ID X_DroMel_CAF1
Location 15,142,540 – 15,142,653
Length 113
Max. P 0.706943
window9541

overview

Window 1

Location 15,142,540 – 15,142,653
Length 113
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 89.75
Mean single sequence MFE -21.74
Consensus MFE -16.10
Energy contribution -16.34
Covariance contribution 0.24
Combinations/Pair 1.12
Mean z-score -1.87
Structure conservation index 0.74
SVM decision value 0.37
SVM RNA-class probability 0.706943
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15142540 113 - 22224390
AUUGCCGUAAUAAUUGCGCUUCUUUACUUUAUUAGUUUAUUUUGCUGUUGCACAUUUUUAUU------UUCCCCCCAUUCCGAAUUUGUUUUGCAAUUGUUCUCGAGUGGCGGGUA-AAC
......((((((...(((.......(((.....)))......))))))))).........((------(.(((.((((((.(((((((.....)))..))))..)))))).))).)-)). ( -20.92)
>DroSec_CAF1 53700 120 - 1
AUUGCCGUAAUAAUUGCGCUUCUUUUCUUUAUUAGUUUAUUUUGCUGUUGCACAUUUUUUUUUUUCCUUUUCCGCCAUUCCAAAUUUGUUUUGCAAUUGUUCUCGAGUGGCGGGUAAAAC
.(((((((((((...(((........((.....)).......))))))))).....................((((((((.....(((.....)))........)))))))))))))... ( -21.68)
>DroSim_CAF1 45025 118 - 1
AUUGCCGUAAUAAUUGCGCUUCUUUUCUUUAUUAGUUUAUUUUGCUGUUGCACAUUUUU--UUUCCCUUUUCCGCCAUUCCAAAUUUGUUUUGCAAUUGUUCUCGAGUGGCGGGUAAAAC
.(((((((((((...(((........((.....)).......)))))))))........--...........((((((((.....(((.....)))........)))))))))))))... ( -21.68)
>DroEre_CAF1 60279 109 - 1
UUUGCCGUAAUAACUGCGCUUCUUUUCUUUAUUAGUUUAUUUAACUGUUGCACAUUUUU----------CUCCGCCAUUCCGAAUUUGUUUUGCAAUUGUUCUCGAGUGGCGCGUA-AAC
..............(((((.............(((((.....)))))............----------....(((((((.(((((((.....)))..))))..))))))))))))-... ( -22.10)
>DroYak_CAF1 61284 109 - 1
AUUGCCGUAAUAAUUGCGCUUCUUUUCUUUAUUACUUUAUUUUGCUGUUGCACAUUUUU----------UUCCGCCAUUCCAAAUUUGUUUUGCAAUUGUUCUCGAGUGGCGCGCA-AAC
.............((((((.......................(((....))).......----------....(((((((.....(((.....)))........))))))))))))-).. ( -22.32)
>consensus
AUUGCCGUAAUAAUUGCGCUUCUUUUCUUUAUUAGUUUAUUUUGCUGUUGCACAUUUUU__U______UUUCCGCCAUUCCAAAUUUGUUUUGCAAUUGUUCUCGAGUGGCGGGUA_AAC
..(((((((.....))))..............((((.......))))..)))..................((((((((((.((..(((.....)))...))...))))))))))...... (-16.10 = -16.34 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:58:36 2006