| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 15,138,050 – 15,138,154 |
| Length | 104 |
| Max. P | 0.994891 |
| Location | 15,138,050 – 15,138,154 |
|---|---|
| Length | 104 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 75.24 |
| Mean single sequence MFE | -22.77 |
| Consensus MFE | -8.56 |
| Energy contribution | -9.48 |
| Covariance contribution | 0.92 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.58 |
| Structure conservation index | 0.38 |
| SVM decision value | 2.52 |
| SVM RNA-class probability | 0.994891 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15138050 104 - 22224390 AAACAUUUU---UUUCCUGGAC-----UUUUUGUUUGUGCUGUGCGGUUGACACACGCACCACCACCCCAAGAAGCACAGCACCACCAACCAC--------CCAACCACCCAACCACCAC .........---....(((..(-----((((((...(((..(((((((....)).)))))...)))..)))))))..))).............--------................... ( -19.60) >DroSec_CAF1 49307 92 - 1 AAACAUUUUU-UUUUCCUGGGC-----UUUUUGUUUGUGCUGUGUGGUUGACACACGCAC---CACCCCAAAAAGCACAGCACCUCGAACCAC--------CCAACCA-----------A ..........-.....(((.((-----((((((...((((.(((((.....)))))))))---.....)))))))).))).............--------.......-----------. ( -24.10) >DroSim_CAF1 40138 93 - 1 AAACAUUUUUUUUUUCCUCGGC-----UUUUUGUUUGUGCUGUGUGGUUGACACAAGCAC---CACCCCAAGCAGCACAGCACCUCGAACCAC--------CCAACCA-----------A ...................((.-----..((((...((((((((((.(((..........---.....))).)).))))))))..))))....--------)).....-----------. ( -19.16) >DroEre_CAF1 56148 96 - 1 AAACAUUUUU-----UCUGGGC-----CUUUUGUUUGUACUGUGCGGCUGGCACACGCAC---CACCCAAUGAGCCACCGCACCACCAACCGCCCAACCACCCAAUCA-----------C ..........-----..(((((-----.....(((.((...((((((.((((.((.....---.......)).)))))))))).)).))).)))))............-----------. ( -25.00) >DroYak_CAF1 57014 93 - 1 AAACAUUUUU-----CCUGGGCUGUGCUGUUUGUUUGUGCUGUGCGGUUGACACACGCAC---CACCCGAUCAGCCACCGCACCAGCAACCAC--------CCAACCA-----------C ..........-----.((((((.((((((.(((..(((((.(((.(.....).)))))).---))..))).))).))).)).)))).......--------.......-----------. ( -26.00) >consensus AAACAUUUUU__UUUCCUGGGC_____UUUUUGUUUGUGCUGUGCGGUUGACACACGCAC___CACCCCAAGAAGCACAGCACCACCAACCAC________CCAACCA___________C ....................................(((((((((((.((.............)).))......)))))))))..................................... ( -8.56 = -9.48 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:58:35 2006