Locus 5868

Sequence ID X_DroMel_CAF1
Location 15,129,767 – 15,129,887
Length 120
Max. P 0.766097
window9521

overview

Window 1

Location 15,129,767 – 15,129,887
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 87.08
Mean single sequence MFE -38.42
Consensus MFE -27.78
Energy contribution -28.86
Covariance contribution 1.08
Combinations/Pair 1.21
Mean z-score -2.00
Structure conservation index 0.72
SVM decision value 0.52
SVM RNA-class probability 0.766097
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15129767 120 - 22224390
UAAAAAGGACAAACGCAGAUGUAGCAUCUGUAUUUCCAUGAUCUGCUCCCUAAGGAAACGCUUUCUUUCGCUGUCCUUGACGGCCUCGGGACCAAAUUCGUUAUUCUGCAGGUCAUUGAG
......(((..((..((((((...))))))..)))))(((((((((((((...(....)..........((((((...))))))...))))........(.....).))))))))).... ( -34.70)
>DroSec_CAF1 41140 120 - 1
UAAAAAGGACAAUCGCAGAUGUAGCAUCUGUAUUUCCAUGAUCUGCUCCCUAAUGAAACGCUUUCUUUCGCUGUCCUUGACGGCCUCGGGACCAAAUUGGUCAUUCUGCAGGUCAUUGAG
......(((.(((.(((((((...)))))))))))))(((((((((..((....((((.......))))((((((...))))))...))((((.....)))).....))))))))).... ( -37.80)
>DroSim_CAF1 31825 120 - 1
UAAAAAGGACAAUCGCAGAUGUAGCAUCUGUAUUUCCAUGAUCUGCUCCCUAAUGAAACGCUUUCUUUCGCUGUCCUUGACGGCCUCGGGACCAAAUUGGUCAUUCUGCAGGUCAUUGAG
......(((.(((.(((((((...)))))))))))))(((((((((..((....((((.......))))((((((...))))))...))((((.....)))).....))))))))).... ( -37.80)
>DroEre_CAF1 48333 120 - 1
UGAAAUGCACAACUGCAGCUGUAGCAUCUGCAUUUCCAUGACUUGCUCCCUAAGGAAACGCCUUCUUUCGUUGGCCUUGGCUGCCUCGGGGCCAAGUUGGUUCCGCUGCAGCUCAUUGAG
.((((((((...((((....))))....)))))))).((((.........(((((.((((........))))..)))))(((((..(((((((.....)))))))..))))))))).... ( -40.70)
>DroYak_CAF1 48968 120 - 1
GGAGAUGGACAACUGCAGCUGUAGUAGCUGUAUUUCCAUGACCUGCUCCCUAAGGAAACGCUUUCUUUCGCUGGUCUUCGCGGCCUCGGGCCCAAAUUCCUUCUGCUGCAGGUCACUGAG
(((((((.((.(((((....))))).).).))))))).((((((((..(..((((((............((........))((((...))))....))))))..)..))))))))..... ( -41.10)
>consensus
UAAAAAGGACAACCGCAGAUGUAGCAUCUGUAUUUCCAUGAUCUGCUCCCUAAGGAAACGCUUUCUUUCGCUGUCCUUGACGGCCUCGGGACCAAAUUGGUUAUUCUGCAGGUCAUUGAG
..............(((((((...)))))))...((.(((((((((.(((....((((.......))))((((((...))))))...)))(((.....)))......))))))))).)). (-27.78 = -28.86 +   1.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:58:18 2006