Locus 5867

Sequence ID X_DroMel_CAF1
Location 15,127,588 – 15,127,708
Length 120
Max. P 0.648467
window9520

overview

Window 0

Location 15,127,588 – 15,127,708
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 92.83
Mean single sequence MFE -45.88
Consensus MFE -36.62
Energy contribution -36.94
Covariance contribution 0.32
Combinations/Pair 1.12
Mean z-score -1.52
Structure conservation index 0.80
SVM decision value 0.24
SVM RNA-class probability 0.648467
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15127588 120 + 22224390
UGUCCAGGCUGCAGGAGCAGCUCAUACGCACCAAAGUGCUCGUCCAGCAGGAACCCGAGGUACUGGACCACUGGCUGCAGCUGCACCGUCUGCUCAAUCUCAACUUGGACAAGGCCAAUC
((((((((.((...(((((((......((((....))))..((((((.....(((...))).))))))....((.(((....)))))).)))))).....)).))))))))......... ( -40.10)
>DroSec_CAF1 39146 120 + 1
UGUCCAGGCUGCAGGAGCAGCUCACACGCACCAAAGUGCUAGUCCAGCAGGAUCCCGAGGUGCUGGACCAUUGGCUGCAGCUGCACCGUCUGCUCAAUCUCAACUUGGACAAGGCCAAUC
((((((((.((...(((((((......((((....))))..((((((((...........))))))))....((.(((....)))))).)))))).....)).))))))))......... ( -44.00)
>DroSim_CAF1 29845 120 + 1
UGUCCAGGCUGCAGGAGCAGCUCACACGCACCAAAGUGCUAGUCCAGCAGGAUCCCGAGGUGCUGGACCAUUGGCUGCAGCUGCACCGUCUGCUCAAUCUCAACUUGGACAAGGCCAAUC
((((((((.((...(((((((......((((....))))..((((((((...........))))))))....((.(((....)))))).)))))).....)).))))))))......... ( -44.00)
>DroEre_CAF1 46216 120 + 1
UGUCCAGGCUGCGGGAGGAGCUCACCCGCAGCAAAGUGCUCGUCCAGCGGGAACCCGAGGUGCUGGACCACUGGCUGGAGCUGCACCGCCUGCUGAAUCUCAAUUUGGACAAGGCCAAUC
..(((((((((((((..(....).))))))))..((((...(((((((((....)).....)))))))))))..)))))........((((.(..(((....)))..)...))))..... ( -49.00)
>DroYak_CAF1 46814 120 + 1
UGGCCAGGCUGCAGGAGCAGCUCACCCGCAGCAAAGUGCUCGUACAGCGGGAGCCCGAGGUGCUGGACCACUGGCUGGAGCUGCACCGCCUGCUGAAUCUCAAUUUGGACAAGGCCAAUC
(((((((((....((.(((((((.((((((((.....)))......)))))((((.(.(((.....))).).)))).))))))).)))))).(..(((....)))..)....)))))... ( -52.30)
>consensus
UGUCCAGGCUGCAGGAGCAGCUCACACGCACCAAAGUGCUCGUCCAGCAGGAACCCGAGGUGCUGGACCACUGGCUGCAGCUGCACCGUCUGCUCAAUCUCAACUUGGACAAGGCCAAUC
((((((((..(((((.((((((((..(((((....))))..((((((((...........))))))))....)..)).))))))....)))))..........))))))))......... (-36.62 = -36.94 +   0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:58:17 2006