Locus 5866

Sequence ID X_DroMel_CAF1
Location 15,126,881 – 15,126,999
Length 118
Max. P 0.963174
window9519

overview

Window 9

Location 15,126,881 – 15,126,999
Length 118
Sequences 3
Columns 119
Reading direction reverse
Mean pairwise identity 78.47
Mean single sequence MFE -33.87
Consensus MFE -19.17
Energy contribution -18.30
Covariance contribution -0.87
Combinations/Pair 1.29
Mean z-score -2.80
Structure conservation index 0.57
SVM decision value 1.55
SVM RNA-class probability 0.963174
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15126881 118 - 22224390
UAGAGGUGGGUUAAUGUCGAUUGGUGACUUAUCGAU-AAAUAGCGCGGUUAUCAACCAAUUGGUUGGAAUCUUCACUAAUGUAGAUGUGCAUAUAGCCCAUAACGUAAGUUACUUAAAA
..(((((((((((.(((((((.(....)..))))))-)....((((((((.((((((....)))))))))).((((....)).)).))))...))))))))(((....))).))).... ( -38.30)
>DroSim_CAF1 29143 116 - 1
UAGAGGUGGGUUAAUGUCGAUUGGCAGCUUAUCGAAAAAAUAGCGCGGUUACAAACCAAUUGGCUGGAAUCUCCACUAAUGCAGCUGUGCCUACAACCUA---CGUAAGUUACUUAAAA
..(((((((((.....(((((.((...)).)))))....((((((((((.....))).(((((.(((.....)))))))))).))))))))))).....(---(....))..))).... ( -28.80)
>DroEre_CAF1 45512 115 - 1
UAGAGGUGGGUUAAUGUCGAUUAGUACCUUAUCGAA-AUAUAGUAUGGUCAGCAACCAUAUGGCUGCAGUCUGCACUAAUGCAGCUGUGACUAGAACCUA---UUUCAAUUAUUUUAUA
..((((((((((...(((..................-.....(((((((.....)))))))....((((.(((((....))))))))))))...))))))---))))............ ( -34.50)
>consensus
UAGAGGUGGGUUAAUGUCGAUUGGUAACUUAUCGAA_AAAUAGCGCGGUUACCAACCAAUUGGCUGGAAUCUCCACUAAUGCAGCUGUGCCUACAACCUA___CGUAAGUUACUUAAAA
......((((((....(((((.((...)).))))).......(((((((.....))).(((((.(((.....))))))))......))))....))))))................... (-19.17 = -18.30 +  -0.87)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:58:16 2006