Locus 5865

Sequence ID X_DroMel_CAF1
Location 15,125,476 – 15,125,594
Length 118
Max. P 0.500000
window9518

overview

Window 8

Location 15,125,476 – 15,125,594
Length 118
Sequences 3
Columns 118
Reading direction forward
Mean pairwise identity 84.94
Mean single sequence MFE -19.78
Consensus MFE -16.50
Energy contribution -16.83
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.45
Structure conservation index 0.83
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15125476 118 + 22224390
AACGCUUCUCUCGCCCGCUUUCUCCCACUUUCGCUGCUCCCUCUCCGUUUCUCCGCUCCACACUCUCUGUGCUUUCUCCCUUCGCAGGACGACUUUCUCACAGCUGGUGAUUAGCGAC
..((((....(((((.(((...........((.((((........((......))...((((.....))))............))))))............))).)))))..)))).. ( -22.00)
>DroSec_CAF1 37017 96 + 1
AACGCUUCUCUCGCCUGCUUUCUCCCACUUUCGCUGCUCCCUCUCCG----------------------UGCUUUCUCCCUUCGCAAGACGACUUUCUCACAGCUGGUGAUUAGCGAC
..((((....(((((.(((...........(((..((..........----------------------.)).........((....))))).........))).)))))..)))).. ( -18.15)
>DroSim_CAF1 27746 96 + 1
AACGCUUCUCUCGCCCGCUUUCUCCCAUUUUCGCUGCUCCCUCUCCG----------------------UGCUUUCUCCCUUCGCAGGACGACUUUCUCACAGCUGGUGAUUAGCGAC
..((((....(((((.(((........................(((.----------------------(((...........)))))).((.....))..))).)))))..)))).. ( -19.20)
>consensus
AACGCUUCUCUCGCCCGCUUUCUCCCACUUUCGCUGCUCCCUCUCCG______________________UGCUUUCUCCCUUCGCAGGACGACUUUCUCACAGCUGGUGAUUAGCGAC
..((((....(((((.(((...........(((((((..............................................))))..))).........))).)))))..)))).. (-16.50 = -16.83 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:58:15 2006