Locus 5864

Sequence ID X_DroMel_CAF1
Location 15,125,232 – 15,125,332
Length 100
Max. P 0.994187
window9517

overview

Window 7

Location 15,125,232 – 15,125,332
Length 100
Sequences 5
Columns 106
Reading direction reverse
Mean pairwise identity 93.47
Mean single sequence MFE -25.90
Consensus MFE -22.48
Energy contribution -22.76
Covariance contribution 0.28
Combinations/Pair 1.08
Mean z-score -2.08
Structure conservation index 0.87
SVM decision value 2.46
SVM RNA-class probability 0.994187
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15125232 100 - 22224390
CAUUUGUACAUAAUAAUGGGUAAACAACAGCAGCCCAAUGACA------AUGACAAGGCAAAUAGCGAGAAAAACUUCGCAAAUGUCAGCUGGCGAUGGUCUCCCA
................((((.......((...(((...(((((------.((......))....(((((......)))))...)))))...)))..))....)))) ( -21.80)
>DroSec_CAF1 36769 100 - 1
CAUUUGUACAUAAUAAUGGGUAAACAACAGCAGCCCAAUGACA------AUGACAAGGCAAAUAGCGAGCAAAACUUUGCAAAUGUCAGCUGGCGGUUGUCUCCCA
................((((...(((((....(((...(((((------........((.....))..((((....))))...)))))...))).)))))..)))) ( -26.40)
>DroSim_CAF1 27490 100 - 1
CAUUUGUACAUAAUAAUGGGUAAACAACAGCAGCCCAAUGACA------AUGACAAGGCAAAUAGCGAGGAAAACUUCGCAAAUGUCAGCUGGCGGUUGUCUCCCA
................((((...(((((....(((...(((((------.((......))....((((((....))))))...)))))...))).)))))..)))) ( -29.30)
>DroEre_CAF1 43982 106 - 1
CAUUUGUACAUAAUAAUGGGUAAACAACAGCAGCCCAAUGACAAUGACAAUGACAAGGCAAAUAGCGAGAAAAACUUUGCAAAUGUCAGCUGGCGGUUGUCUCCCA
................((((...(((((....(((...(((((.......((......))....(((((......)))))...)))))...))).)))))..)))) ( -24.70)
>DroYak_CAF1 44659 106 - 1
CAUUUGUACAUAAUAAUGGGUAAACAACAGCAGCCCAAUGACAAUGACAAUGACAAGGCAAAUAGCGAGGGAAACUUGGCAAAUGUCAGCUGGCGGUUGUCUUCCA
................((((...(((((....(((...(((((.......((......))....((.(((....))).))...)))))...))).)))))..)))) ( -27.30)
>consensus
CAUUUGUACAUAAUAAUGGGUAAACAACAGCAGCCCAAUGACA______AUGACAAGGCAAAUAGCGAGAAAAACUUCGCAAAUGUCAGCUGGCGGUUGUCUCCCA
................((((...(((((....(((...(((((.......((......))....(((((......)))))...)))))...))).)))))..)))) (-22.48 = -22.76 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:58:14 2006