Locus 5863

Sequence ID X_DroMel_CAF1
Location 15,124,993 – 15,125,086
Length 93
Max. P 0.712252
window9516

overview

Window 6

Location 15,124,993 – 15,125,086
Length 93
Sequences 3
Columns 96
Reading direction forward
Mean pairwise identity 88.07
Mean single sequence MFE -24.93
Consensus MFE -15.96
Energy contribution -16.29
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -3.20
Structure conservation index 0.64
SVM decision value 0.38
SVM RNA-class probability 0.712252
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15124993 93 + 22224390
CGUUGCCACUGGCAACUUUUGUAGCCGUCUGGCACUUUAAAGCUAG---ACUGCGACUUGUUUUCAUUUUAAUGUCUGUUUUUAAUCUUCUUGCUU
.((((((...))))))....(((((.(((((((........)))))---)).))(((................)))...............))).. ( -23.39)
>DroSim_CAF1 27247 96 + 1
CGUUGCCAGUGGCAACUUUUGUAGCCGUCUGGCACUUUAAAGCUAGACGACUGCGACUUGUUUUCAUUUUAAUGUCUGUUUUUAAUCUUCUUGCUU
.((((((...))))))..((((((.((((((((........)))))))).))))))........................................ ( -27.30)
>DroEre_CAF1 43765 87 + 1
CAUUGCCAGUGGCAACUUUUGUAGCCGUCUGGCU------AGAUUG---ACUGCGACUUGUUUUCAUUUUAAUGUCUGUUUUUAAUCUUACGGCUU
....(((((((((.((....)).)))).))))).------((((((---(..(((((................))).))..)))))))........ ( -24.09)
>consensus
CGUUGCCAGUGGCAACUUUUGUAGCCGUCUGGCACUUUAAAGCUAG___ACUGCGACUUGUUUUCAUUUUAAUGUCUGUUUUUAAUCUUCUUGCUU
....(((((((((.((....)).)))).))))).....................(((................))).................... (-15.96 = -16.29 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:58:13 2006