| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 15,124,355 – 15,124,455 |
| Length | 100 |
| Max. P | 0.786427 |
| Location | 15,124,355 – 15,124,455 |
|---|---|
| Length | 100 |
| Sequences | 3 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 84.26 |
| Mean single sequence MFE | -20.87 |
| Consensus MFE | -19.17 |
| Energy contribution | -19.50 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.26 |
| Structure conservation index | 0.92 |
| SVM decision value | 0.57 |
| SVM RNA-class probability | 0.786427 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15124355 100 + 22224390 GGCUUAUUCAAUUUCGCAAUCGCCGCCUCUGGAGUCGAGCCACCUCCUGACCACCCCCUCCAAUGAGGUGCACUCCCCCUUUAGCCCCUUUAGCCCCUUC--------------- ((((...........((....)).....((((((..(((.((((((.((...........))..))))))..)))...)))))).......)))).....--------------- ( -18.80) >DroSec_CAF1 35866 106 + 1 GGCUUAUUCAAUUUCGCAAUCGCCGCCUCUGGAGUCGAGCCACCUCCUAACCACCCCCUCCAAUGAGGGGCAUUCCCCCUUUAGCCCCUUCAG---------CCCCUUCACCCCC (((((((((......((.......)).....)))).)))))......................((((((((............))))).))).---------............. ( -21.90) >DroSim_CAF1 26619 115 + 1 GGCUUAUUCAAUUUUGCAAUCGCCGCCUCUGGAGUCGAGCCACCUCCUAACCACCCCCUCCAAUGAGGGGCAUUCCCCCUUUAGCCCCUUCAGCCCCUUCAGCCCCUUCACCCCC (((((((((......((.......)).....)))).)))))......................((((((((............))))).)))....................... ( -21.90) >consensus GGCUUAUUCAAUUUCGCAAUCGCCGCCUCUGGAGUCGAGCCACCUCCUAACCACCCCCUCCAAUGAGGGGCAUUCCCCCUUUAGCCCCUUCAGCCCCUUC__CCCCUUCACCCCC (((((((((......((.......)).....)))).))))).......................(((((((............)))))))......................... (-19.17 = -19.50 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:58:12 2006