| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 15,122,793 – 15,122,909 |
| Length | 116 |
| Max. P | 0.728222 |
| Location | 15,122,793 – 15,122,909 |
|---|---|
| Length | 116 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 65.78 |
| Mean single sequence MFE | -36.04 |
| Consensus MFE | -11.52 |
| Energy contribution | -13.36 |
| Covariance contribution | 1.84 |
| Combinations/Pair | 1.21 |
| Mean z-score | -2.06 |
| Structure conservation index | 0.32 |
| SVM decision value | 0.42 |
| SVM RNA-class probability | 0.728222 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15122793 116 + 22224390 UGAUUUUCAUUUCCCAACGGUAUCUGGCUUAUAGCGAUUUUUCCGGCGAUUUGGAGCGCAUUUUCCAUGGUAUCCCAUGGUAU-CCGCCAUGGUAACAUACGUGGAGAUGCCGCAAA--- .................(((((((.........(((....((((((....)))))))))....((((((.....(((((((..-..))))))).......)))))))))))))....--- ( -34.40) >DroSec_CAF1 34407 117 + 1 UGAUUUUCAUUUCCCAACGGAAUCUGGCUCAGCGCGAUUUUUCCGGCGAUUUGGAGCCCAUUUUCCAUGGUAUCCCAUGGUAUCCCGCCAUGGUAACAUACGUGGAGAUGCCGCAAA--- .......((((((((...((((...(((((..(((..........))).....)))))....))))...((((.(((((((.....)))))))....))))).))))))).......--- ( -36.10) >DroEre_CAF1 41420 106 + 1 UGAUACUCAUCUCCCAACGGAGUCAAGCUCAUCGCGAUUUUUCCGGCGAUUUGCCGCGCAGUUUCCAUGGUAU-----------CCGCCAUGGUUACAUACGUGGAGAUGACGCAAA--- ......((((((((..((((((.....)))...(((.......((((.....))))))).((..(((((((..-----------..)))))))..))...)))))))))))......--- ( -37.51) >DroYak_CAF1 42024 106 + 1 UGAUUUUCAUUUCCCAGCGGUAUCAAGCUCAGCGCGAUUUUUCCGGCGAUUUGCCGCGCAUUUUCCAUGGUAU-----------CCGCCAUGGUAACAUACGUGCAGAUGCCGCAAA--- ................((((((((..((.(.((((((....)).(((.....))))))).....(((((((..-----------..)))))))........).)).))))))))...--- ( -38.20) >DroPer_CAF1 88198 120 + 1 AUCGAAGCCUCCCACUGCUCUUCUAACCGUUAAAAUAUCUCCAUGGCGACUCCGCCCCUAGACCACUGUGCCGACGCGCCCACACAUACAUGGAGGAGUACGGGGAGAAGCCGCAAGCUC ........(((((..((((((((((............(((....((((....))))...))).....((((....))))...........))))))))))..))))).((.(....))). ( -34.00) >consensus UGAUUUUCAUUUCCCAACGGUAUCAAGCUCAGCGCGAUUUUUCCGGCGAUUUGGCGCGCAUUUUCCAUGGUAU_C______A__CCGCCAUGGUAACAUACGUGGAGAUGCCGCAAA___ ...........................................(((((.(((..((((......(((((((...............))))))).......))))))).)))))....... (-11.52 = -13.36 + 1.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:58:11 2006