Locus 5858

Sequence ID X_DroMel_CAF1
Location 15,118,968 – 15,119,079
Length 111
Max. P 0.995433
window9509

overview

Window 9

Location 15,118,968 – 15,119,079
Length 111
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 78.53
Mean single sequence MFE -25.65
Consensus MFE -18.62
Energy contribution -20.73
Covariance contribution 2.11
Combinations/Pair 1.04
Mean z-score -2.55
Structure conservation index 0.73
SVM decision value 2.58
SVM RNA-class probability 0.995433
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15118968 111 - 22224390
UAAUUUUAUCGAUGCAUGUUGCAUUCUUCAUUGUGUAACAUGUAAA--CAUUUG----UAUUGCUGAAUGUCCAUUUUCAGUUUU---UUUUUUUUUUUGAUGGCAAAAAUGCGAUAAAA
...(((((((..((((((((((((........))))))))))))..--.....(----((((((((((........))))))...---........((((....)))))))))))))))) ( -27.90)
>DroSec_CAF1 30624 116 - 1
CAAUUUUAUCGAUGCAUGUUGCAUCCUUUAUUGUGUAACAGGUAAACUCAUUUA----UAUUGCUGAAUGUCCAUUUUCAGUUGUUGUUUUUCUUUUUCGAUGGCAACAAUGCGAUAAAA
...((((((((.(((.((((((((........)))))))).)))..........----....((((((........))))))(((((((..((......)).)))))))...)))))))) ( -27.40)
>DroYak_CAF1 38084 113 - 1
AAAUUGCAUCGAUACAUGUAGCAUUCCUCAUUGUGUAACUUGUAAACUCAUAUAUAUUUAUUGCUGACUAACGAUUUUCAGAUG-U--UUU----UUUUUAUGGGAAAAAUGCGAUUAAA
.((((((((...((((.((.((((........)))).)).))))..((((((...........((((..........))))...-.--...----....))))))....))))))))... ( -21.65)
>consensus
AAAUUUUAUCGAUGCAUGUUGCAUUCUUCAUUGUGUAACAUGUAAACUCAUUUA____UAUUGCUGAAUGUCCAUUUUCAGUUGUU__UUUU_UUUUUUGAUGGCAAAAAUGCGAUAAAA
...((((((((.((((((((((((........))))))))))))..................((((((........))))))..............................)))))))) (-18.62 = -20.73 +   2.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:58:07 2006