Locus 5852

Sequence ID X_DroMel_CAF1
Location 15,113,641 – 15,113,758
Length 117
Max. P 0.565286
window9493

overview

Window 3

Location 15,113,641 – 15,113,758
Length 117
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 85.59
Mean single sequence MFE -20.53
Consensus MFE -15.29
Energy contribution -15.53
Covariance contribution 0.24
Combinations/Pair 1.10
Mean z-score -1.59
Structure conservation index 0.74
SVM decision value 0.06
SVM RNA-class probability 0.565286
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15113641 117 - 22224390
CUGGGCGCCUAAAAGCAUGCAACAGCAAUUUAAAUUUUGUGCGCAUUUCAAUUUGCGAAAUGGCGGAAUAGAAAAAAAAACAAAAAACCACCAACGCCA--AACAACAAAAAUGCAGCU-
.(((....)))...((((((....))........((((((.((((........))))...(((((.............................)))))--....))))))))))....- ( -20.95)
>DroSec_CAF1 25401 114 - 1
CUGGGCGCCUAAAAGCAUGCAACAGCAAUUUAAAUUUUGUGCGCAUUUCAAUUUGCGAAAUGGCGGAAUAGAAAAAAAAA---GAAACCACCAACGCCA--AACAACAAAAAUGCAGCU-
.(((....)))...((((((....))........((((((.((((........))))...(((((...............---...........)))))--....))))))))))....- ( -21.07)
>DroEre_CAF1 32543 108 - 1
CUGUCCGCCUAAAAGCAUGCAACAGCAAUUUAAAUUUUGUGCGCAUUUCAAUUUGCGAAAUAGCGGAAUAAAAAAA---------AGCCACCAAAGCCA--AAAAACAAAAAUGCAGCU-
.............(((.((((............(((((((.((((........)))).....))))))).......---------.((.......))..--...........)))))))- ( -15.80)
>DroYak_CAF1 31595 108 - 1
CCGGCCGCCUAAAAGCAUGCAACAGCAAUUUAAAUUUUGUGCGCAUUUCAAUUUGCGAAAUGGCGGAAUAGAAAAA----------ACCACCAACGCCA--AACAACAAAAAUGCAGCUG
.((((.((.........(((....))).......((((((.((((........))))...(((((...........----------........)))))--....))))))..)).)))) ( -23.61)
>DroPer_CAF1 78188 102 - 1
UCGUACUCCUAAAAGCAUGCAACAGCAAUUUAAAUUUUGUGCGCAUUUCAAUUUGAGAAAUGGCAGA-----AAAA----------AGCGC--AUGCUAACAACAACAAAAAUGCAGCU-
.............(((((((....((((........))))((.((((((.......))))))))...-----....----------...))--))))).....................- ( -21.20)
>consensus
CUGGCCGCCUAAAAGCAUGCAACAGCAAUUUAAAUUUUGUGCGCAUUUCAAUUUGCGAAAUGGCGGAAUAGAAAAA_________AACCACCAACGCCA__AACAACAAAAAUGCAGCU_
..............((((((....))........((((((.((((........))))...(((((.............................)))))......))))))))))..... (-15.29 = -15.53 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:53 2006