Locus 5851

Sequence ID X_DroMel_CAF1
Location 15,112,823 – 15,112,942
Length 119
Max. P 0.773566
window9492

overview

Window 2

Location 15,112,823 – 15,112,942
Length 119
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 87.15
Mean single sequence MFE -34.77
Consensus MFE -25.45
Energy contribution -27.82
Covariance contribution 2.37
Combinations/Pair 1.06
Mean z-score -1.88
Structure conservation index 0.73
SVM decision value 0.54
SVM RNA-class probability 0.773566
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15112823 119 - 22224390
UUGAAACGUUUCGCCAUUUAAACUUUAAUGCCACGGCACCCAGUGGCGGCCAAGGGA-AAAUCGCACGAUGGAAAGCGGAAAAGCUGGGUAAGUAUAAAUUGGAUGGCGAUGGCGGAGUG
......(((((((((((((((....((.((((.((((.(((..(((...))).))).-...((((..........))))....))))))))..))....))))))))))).))))..... ( -36.50)
>DroSec_CAF1 24636 117 - 1
UUGAAACGUUUCGCCAUUUAAACUUUAAUGCCACGGCACCCAGUGG---CCAAGGGAAAAAUCGCGCAAUGGAAAGCGGAAAAGCUGGGAAAGUAUAAAUUGGAAGGCGAUGGCGGAGUG
......((((((((((((((.(((((..(((....)))((((((..---((..(.((....)).)((........))))....))))))))))).))))).....))))).))))..... ( -34.80)
>DroEre_CAF1 31858 116 - 1
UUAAAUCGUUUCGCCAUUUUAACUUUCAUGCCACGGCAUCCAGUGG---CCAAGGGA-AAAACUCGCGAUGGAAAGCGGAAAAGCUGGGAAAGUAUAAAUUGCAUGGCGAUGGCUGAGCG
......(((((.((((((...((((((((((....))))(((((..---((..(((.-....)))((........))))....))))))))))).......((...)))))))).))))) ( -35.20)
>DroYak_CAF1 30867 106 - 1
UUGAAACGUUUCGCCAUUUAAACUUUAAUGCCACGGCACCCAGUGG---CCAAGGGA-AAAACUCGC----------GGAAAAGCUGGGAAAGUAUAAAUUGGAUGGCGUUGGUGGAGUG
......((...(((((((((((((((..(((....)))((((((..---((..(((.-....)))..----------))....))))))))))).....)))))))))).))........ ( -32.60)
>consensus
UUGAAACGUUUCGCCAUUUAAACUUUAAUGCCACGGCACCCAGUGG___CCAAGGGA_AAAACGCGCGAUGGAAAGCGGAAAAGCUGGGAAAGUAUAAAUUGGAUGGCGAUGGCGGAGUG
......((((((((((((((((((((..(((....)))((((((.....((..(((......)))((........))))....))))))))))).....))))))))))).))))..... (-25.45 = -27.82 +   2.37)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:52 2006