Locus 5850

Sequence ID X_DroMel_CAF1
Location 15,112,532 – 15,112,649
Length 117
Max. P 0.544823
window9491

overview

Window 1

Location 15,112,532 – 15,112,649
Length 117
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 85.63
Mean single sequence MFE -38.17
Consensus MFE -29.17
Energy contribution -30.42
Covariance contribution 1.25
Combinations/Pair 1.25
Mean z-score -1.44
Structure conservation index 0.76
SVM decision value 0.02
SVM RNA-class probability 0.544823
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15112532 117 - 22224390
CAAAAUAAUGCGACCCCAUGCAGCGAUUUUGAGCUCGAAGCUCGGGGU--UUUUU-GGGGAUUGGAGGGGCCAAAAGACUAUUACUUUUGCAGUUUCAGCUGCAGAUGCCCCUUCAGUUU
.............(((((......((((((((((.....)))))))))--)...)-))))(((((((((((.(((((.......)))))(((((....)))))....))))))))))).. ( -44.40)
>DroSec_CAF1 24348 114 - 1
CAAAAUAAUGCGACCCCAUGCAGCGAUUUUGAGCUGGAUGCUCGAAGC-----UC-GGGGAUUCGAGGGGCCAAAAGACUAUUACCUUCGCAGUUUCAGUUGCAGAUGCCCCUUCAGUCU
........((((......)))).(((((((((((.....)))))))).-----))-).(((((.(((((((...(((........))).((((......))))....))))))).))))) ( -33.80)
>DroEre_CAF1 31582 113 - 1
CAAAAUAAUGCGACCCCAUGCGGCGAUUUUGAGUUCGAAGCUCGGGGG---UUUU-GGGGAUUG---GGGCCGAUGGACUAUUACUUUCGCAGUUUCAGUUGCAGAAACCCCUUCAGGCU
((((((..((((......))))...)))))).......((((.(((((---((((-.(.(((((---..(((((.((.......)).)))..))..))))).).)))))))))...)))) ( -35.60)
>DroYak_CAF1 30568 120 - 1
CAAAAUAAUGCGACCCCAUGCAGCGAUUUUGAGUUCGAAGCUCAAGGGGUUUUUUGGGGCAUUGGAGGGGCCAAAAGACUAUUACUUUCGCAGUUUCAGUUGCAGAAGCCCCUUCGGUCG
...........(.(((((...(((..((((((((.....)))))))).)))...))))))(((((((((((.....((((...(((.....)))...))))......))))))))))).. ( -38.90)
>consensus
CAAAAUAAUGCGACCCCAUGCAGCGAUUUUGAGCUCGAAGCUCGAGGG___UUUU_GGGGAUUGGAGGGGCCAAAAGACUAUUACUUUCGCAGUUUCAGUUGCAGAAGCCCCUUCAGUCU
.............((((.........((((((((.....)))))))).........))))(((((((((((.(((((.......)))))((((......))))....))))))))))).. (-29.17 = -30.42 +   1.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:51 2006