| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 15,110,467 – 15,110,577 |
| Length | 110 |
| Max. P | 0.998621 |
| Location | 15,110,467 – 15,110,577 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 93.43 |
| Mean single sequence MFE | -27.23 |
| Consensus MFE | -25.13 |
| Energy contribution | -25.13 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.35 |
| Structure conservation index | 0.92 |
| SVM decision value | 3.16 |
| SVM RNA-class probability | 0.998621 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15110467 110 + 22224390 AGCGAAAUACAAACACACUCAAAAGUGAAAAUGGAAAAAGUUUCAAUGGUUUUAUCAUGUUUACUUUUAUUUGUGUCACUGAGUGGUUGUAUAAGCCCCAGC--AGA--A-CC-----CC .((...((((((...((((((...((((..(..((((((((....(((((...)))))....)))))).))..).)))))))))).))))))..))......--...--.-..-----.. ( -25.50) >DroPse_CAF1 43520 115 + 1 AGCAAAAUACAAACACACUCAAAAGUGAAAAUGGAAAAAGUUUCAAUGGUUUUAUCAUGUUUACUUUUAUUUGUGUCACUGAGUGGUUGUAUAAGCCCCGGC--ACG--A-CCACAGCUC (((.........(((((...(((((((((.((((.((((.(......).)))).)))).)))))))))...)))))......((((((((....((....))--)))--)-)))).))). ( -30.70) >DroSec_CAF1 22252 112 + 1 AGCGAAAUACAAACACACUCAAAAGUGAAAAUGGAAAAAGUUUCAAUGGUUUUAUCAUGUUUACUUUUAUUUGUGUCACUGAGUGGUUGUAUAAGCCCCAGC--AGAUAA-AC-----CC .((...((((((...((((((...((((..(..((((((((....(((((...)))))....)))))).))..).)))))))))).))))))..))......--......-..-----.. ( -25.50) >DroEre_CAF1 29736 110 + 1 AGCGAAAUACAAACACACUCAAAAGUGAAAAUGGAAAAAGUUUCAAUGGUUUUAUCAUGUUUACUUUUAUUUGUGUCACUGAGUGGUUGUAUAAGCCCCAGC--AGA--A-CC-----CC .((...((((((...((((((...((((..(..((((((((....(((((...)))))....)))))).))..).)))))))))).))))))..))......--...--.-..-----.. ( -25.50) >DroYak_CAF1 28445 113 + 1 AGCGAAAUACAAACACACUCAAAAGUGAAAAUGGAAAAAGUUUCAAUGGUUUUAUCAUGUUUACUUUUAUUUGUGUCACUGAGUGGUUGUAUAAGCCCCAGCCCAAA--ACCC-----CC .((...((((((...((((((...((((..(..((((((((....(((((...)))))....)))))).))..).)))))))))).))))))..))...........--....-----.. ( -25.50) >DroPer_CAF1 69146 115 + 1 AGCAAAAUACAAACACACUCAAAAGUGAAAAUGGAAAAAGUUUCAAUGGUUUUAUCAUGUUUACUUUUAUUUGUGUCACUGAGUGGUUGUAUAAGCCCCGGC--ACG--A-CCACAGCUC (((.........(((((...(((((((((.((((.((((.(......).)))).)))).)))))))))...)))))......((((((((....((....))--)))--)-)))).))). ( -30.70) >consensus AGCGAAAUACAAACACACUCAAAAGUGAAAAUGGAAAAAGUUUCAAUGGUUUUAUCAUGUUUACUUUUAUUUGUGUCACUGAGUGGUUGUAUAAGCCCCAGC__AGA__A_CC_____CC .((...((((((...((((((...((((..(..((((((((....(((((...)))))....)))))).))..).)))))))))).))))))..))........................ (-25.13 = -25.13 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:48 2006