Locus 5846

Sequence ID X_DroMel_CAF1
Location 15,107,009 – 15,107,124
Length 115
Max. P 0.562891
window9485

overview

Window 5

Location 15,107,009 – 15,107,124
Length 115
Sequences 4
Columns 115
Reading direction reverse
Mean pairwise identity 96.96
Mean single sequence MFE -19.60
Consensus MFE -18.39
Energy contribution -18.45
Covariance contribution 0.06
Combinations/Pair 1.04
Mean z-score -1.55
Structure conservation index 0.94
SVM decision value 0.06
SVM RNA-class probability 0.562891
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15107009 115 - 22224390
ACCGAACAGCUUUUGGCUUUCACUUUUCACACAUACCGCAAUUAAUUUCCGUUUGAUUGUUUGUCUCUGUCCGGACUCCACAUUCAAAGCCCCACCCGGAAUCCUAUUUGCUUUC
...(((.(((.....))))))................((((.((..((((((((((.(((..((((......))))...))).)))))........)))))...)).)))).... ( -21.40)
>DroSec_CAF1 19712 115 - 1
ACCGAACAGCUUUUGGCUUUCACUUUUCACACAUCCCGCAAUUAAUUUCCGUUUGAUUGUUUGUCUCUGUCCGGACUCCUCAUUCAAAGCCCCACCCGGAAUCCUAUUUGCUUUC
...(((.(((.....))))))................((((.((..((((((((((.((...((((......))))....)).)))))........)))))...)).)))).... ( -20.20)
>DroEre_CAF1 27693 115 - 1
ACCGAACAGCUUUUGGCUUUCACUUUUCACACAUACCGCAAUUAAUUUCCGUUUGAUUGUUUGUCUCUGUCCGGACUCCUCAUUCAAAGCCACACCCAGAAUCCUAUUUGCUUUC
...(((.(((...(((((((.................((((((((.......))))))))..((((......)))).........))))))).....((....))....)))))) ( -17.00)
>DroYak_CAF1 26104 115 - 1
ACCGAGCAGCUUUUGGCUUUCACUUUUCACACAUCCCGCAAUUAAUUUCCGUUUGAUUGUUUGUCUCUGUCCGGACUCCCCAUUCAAAGCCCCAACCGGAAUCCUAUUUGCUUUC
...((((((.....((((((.................((((((((.......))))))))..((((......)))).........))))))((....))........)))))).. ( -19.80)
>consensus
ACCGAACAGCUUUUGGCUUUCACUUUUCACACAUACCGCAAUUAAUUUCCGUUUGAUUGUUUGUCUCUGUCCGGACUCCUCAUUCAAAGCCCCACCCGGAAUCCUAUUUGCUUUC
...(((.(((.....))))))................((((.((..((((((((((.((...((((......))))....)).)))))........)))))...)).)))).... (-18.39 = -18.45 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:45 2006