Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 15,104,776 – 15,104,883 |
Length | 107 |
Max. P | 0.997005 |
Location | 15,104,776 – 15,104,883 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 94.02 |
Mean single sequence MFE | -34.48 |
Consensus MFE | -33.42 |
Energy contribution | -33.06 |
Covariance contribution | -0.36 |
Combinations/Pair | 1.12 |
Mean z-score | -1.74 |
Structure conservation index | 0.97 |
SVM decision value | 2.78 |
SVM RNA-class probability | 0.997005 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15104776 107 + 22224390 AUUCUGUGGGCUGGCCGCAUUACGCAUACGCCGUGUGGUGUCUGCGUGGCAAAGGCUCCUUAAACUUCCGCUCAGUCCAUUCAUCUUCCACCCCCGCAUUCCGAGUC .....((((((((((.((..((((((.(((((....))))).)))))))).(((....)))........)).))))))))........................... ( -31.40) >DroSec_CAF1 17540 107 + 1 AUUCUGUGGGCUGGCCGCAUUACGCAUACGACAUGUGGCGUCUGCGUGGCAAAGGCUCCUUAAACUUCCGCUCAGCCCAUUCAUCUUCCACCCCCGCAUUCCACGUC .....((((((((((.((..((((((.(((.(....).))).)))))))).(((....)))........)).))))))))........................... ( -29.60) >DroSim_CAF1 21820 107 + 1 AUUCUGUGGGCUGGCCGCAUUACGCAUACGCCGUGUGGCGUCUGCGUGGCAAAGGCUCCUUAAACUUCCGCUCAGCCCAUUCAUCUUCCACCCCCGCAUUCCACGUC .....((((((((((.((..((((((.(((((....))))).)))))))).(((....)))........)).))))))))........................... ( -36.00) >DroEre_CAF1 25168 107 + 1 AUUGUGUGGGCUGGCCGCAUUACGCAUACGCCGUGUGGUGUCUGCGUGGCAAAGGCUCCUUAAACUUCCGCUCAGCCCAUUCAUCUUCCACCGCCGCAUUCCAGGUC ..((.((((((((((.((..((((((.(((((....))))).)))))))).(((....)))........)).)))))))).)).........(((........))). ( -37.90) >DroYak_CAF1 22663 102 + 1 AUUGUGUGGGCUGGCCGCAUUACGCAUACGCCGUGUGGUGUCUGCGUGGCAAGGGCUCCUUAAACUUCCGCUCAGCCCAUUCAUCUUCCACCCCCGCACU-----UC ...(((((((.(((..((..((((((.(((((....))))).))))))))..(((((................))))).........)))..))))))).-----.. ( -37.49) >consensus AUUCUGUGGGCUGGCCGCAUUACGCAUACGCCGUGUGGUGUCUGCGUGGCAAAGGCUCCUUAAACUUCCGCUCAGCCCAUUCAUCUUCCACCCCCGCAUUCCACGUC .....((((((((((.((..((((((.(((((....))))).)))))))).(((....)))........)).))))))))........................... (-33.42 = -33.06 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:43 2006