Locus 5842

Sequence ID X_DroMel_CAF1
Location 15,102,958 – 15,103,069
Length 111
Max. P 0.901656
window9478

overview

Window 8

Location 15,102,958 – 15,103,069
Length 111
Sequences 5
Columns 112
Reading direction reverse
Mean pairwise identity 92.16
Mean single sequence MFE -39.96
Consensus MFE -30.16
Energy contribution -31.92
Covariance contribution 1.76
Combinations/Pair 1.11
Mean z-score -2.38
Structure conservation index 0.75
SVM decision value 1.02
SVM RNA-class probability 0.901656
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15102958 111 - 22224390
GGGCACGGCUGUCAUUCCAAUGCUGUCCACCGAAUGUAAUGUUAGCAUAAAAGUUGACAACAUCCGGGGUCAGCCUGAGCCGG-GGUCAAAGGUUGAUCAAGGCGAACACAU
.((((....)))).(((....((((.((.(((.((((..(((((((......))))))))))).))))).))))....(((..-(((((.....)))))..))))))..... ( -37.80)
>DroSec_CAF1 15751 111 - 1
GGGCACGGUUGUCAUUCCAAUGCUGCCCACCGAAUGUAAUGUUAGCAUAAAAGUUGACAACAUCCGUGGUCAGCCUGGGCCGG-GGUCAAAGGUUGAUCAAGGCGAACACAU
(((((..((((......))))..)))))..((.((((..(((((((......)))))))))))((.((((((((((.(((...-.)))..)))))))))).))))....... ( -38.70)
>DroSim_CAF1 20038 111 - 1
GGGCACGGUUGUCAUUCCAAUGCUGCCCACCGAAUGUAAUGUUAGCAUAAAAGUUGACAACAUCCGGGGUCAGCCUGGGCCGG-GGUCAAAGGUUGAUCAAGGCGAACACAU
(((((..((((......))))..))))).(((.((((..(((((((......))))))))))).)))(((((((((.(((...-.)))..)))))))))............. ( -41.60)
>DroEre_CAF1 23514 106 - 1
GGGCACGGUUGUCAUUCCAAUGCUGGCCACCGAAU-----GUUGGCAUAAAACUCGACAACAUCCGGGGUCAGCUUGGGCCGG-GGUCAAAGGUUGAUCCAGGCGAACACAU
.((((....))))...((((.(((((((.(((.((-----((((.............)))))).))))))))))))))(((.(-(((((.....)))))).)))........ ( -44.82)
>DroYak_CAF1 20932 107 - 1
GGGCACGGCUGUCAUUCCAAUGCUGCCCACCGAAU-----GUUAGCAUAAAACUUGACAACAUUCGGGGUCAACUUGGGCCGGGGGUCAAAGGUUGAUCAAGGCGAACACAU
(((((((..((......)).)).))))).((((((-----(((..((.......))..)))))))))(((((((((.((((...))))..)))))))))............. ( -36.90)
>consensus
GGGCACGGUUGUCAUUCCAAUGCUGCCCACCGAAUGUAAUGUUAGCAUAAAAGUUGACAACAUCCGGGGUCAGCCUGGGCCGG_GGUCAAAGGUUGAUCAAGGCGAACACAU
(((((..((((......))))..))))).(((.((((..(((((((......))))))))))).)))(((((((((.((((...))))..)))))))))............. (-30.16 = -31.92 +   1.76)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:39 2006