Locus 5841

Sequence ID X_DroMel_CAF1
Location 15,102,513 – 15,102,624
Length 111
Max. P 0.983361
window9476 window9477

overview

Window 6

Location 15,102,513 – 15,102,624
Length 111
Sequences 4
Columns 111
Reading direction forward
Mean pairwise identity 97.13
Mean single sequence MFE -29.45
Consensus MFE -28.70
Energy contribution -28.70
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -3.64
Structure conservation index 0.97
SVM decision value 1.94
SVM RNA-class probability 0.983361
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15102513 111 + 22224390
UUUUGCUCUCUGCUUCCCUUUUUGCACAUCCGUUGCCGUUUGUGCCAUUUGUUUAUUGCCAGUUUUAUUGCUUCAUUGCGAAAACUGGCGAGCUAUACUCUGCUUAUCUAC
....((((...............(((((..((....))..)))))............((((((((..((((......)))))))))))))))).................. ( -30.10)
>DroSec_CAF1 15306 110 + 1
UUUUGCACUCUGCUUC-CUUUUUGCACAUCCGUUGCCGUUUGUGCCAUUUGUUUAUUGCCAGUUUCAUUGCUUCAUUGCGAAAACUGGCGAGCUAUACUCUGCUUAUCUGC
....(((....((((.-......(((((..((....))..)))))............((((((((..((((......)))))))))))))))).......)))........ ( -28.80)
>DroSim_CAF1 19595 110 + 1
UUUUGCACUCUGCUUC-CUUUUUGCACAUCCGUUGCCGUUUGUGCCAUUUGUUUAUUGCCAGUUUCAUUGCUUCAUUGCGAAAACUGGCGAGCUAUACUCUGCUUAUCUGC
....(((....((((.-......(((((..((....))..)))))............((((((((..((((......)))))))))))))))).......)))........ ( -28.80)
>DroEre_CAF1 23054 109 + 1
UUUUGCUCUCUGCUUC-CUU-UUGCACAUCCGUUGCCGUUUGUGCCAUUUGUUUAUUGCCAGUUUCAUUGCUUCAUUGCGAAAACUGGCGAGCUACACUCUGCUUAUCUGC
....((((........-...-..(((((..((....))..)))))............((((((((..((((......)))))))))))))))).................. ( -30.10)
>consensus
UUUUGCACUCUGCUUC_CUUUUUGCACAUCCGUUGCCGUUUGUGCCAUUUGUUUAUUGCCAGUUUCAUUGCUUCAUUGCGAAAACUGGCGAGCUAUACUCUGCUUAUCUGC
....((.....))..........(((((..((....))..)))))............((((((((..((((......))))))))))))((((........))))...... (-28.70 = -28.70 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 7

Location 15,102,513 – 15,102,624
Length 111
Sequences 4
Columns 111
Reading direction reverse
Mean pairwise identity 97.13
Mean single sequence MFE -34.75
Consensus MFE -32.78
Energy contribution -32.40
Covariance contribution -0.38
Combinations/Pair 1.08
Mean z-score -4.93
Structure conservation index 0.94
SVM decision value 0.83
SVM RNA-class probability 0.862302
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15102513 111 - 22224390
GUAGAUAAGCAGAGUAUAGCUCGCCAGUUUUCGCAAUGAAGCAAUAAAACUGGCAAUAAACAAAUGGCACAAACGGCAACGGAUGUGCAAAAAGGGAAGCAGAGAGCAAAA
..................(((((((((((((.((......))...)))))))))............(((((..((....))..)))))...............)))).... ( -34.10)
>DroSec_CAF1 15306 110 - 1
GCAGAUAAGCAGAGUAUAGCUCGCCAGUUUUCGCAAUGAAGCAAUGAAACUGGCAAUAAACAAAUGGCACAAACGGCAACGGAUGUGCAAAAAG-GAAGCAGAGUGCAAAA
(((..(..((.(((.....)))(((((((((.((......))...)))))))))............(((((..((....))..)))))......-...))..).))).... ( -34.60)
>DroSim_CAF1 19595 110 - 1
GCAGAUAAGCAGAGUAUAGCUCGCCAGUUUUCGCAAUGAAGCAAUGAAACUGGCAAUAAACAAAUGGCACAAACGGCAACGGAUGUGCAAAAAG-GAAGCAGAGUGCAAAA
(((..(..((.(((.....)))(((((((((.((......))...)))))))))............(((((..((....))..)))))......-...))..).))).... ( -34.60)
>DroEre_CAF1 23054 109 - 1
GCAGAUAAGCAGAGUGUAGCUCGCCAGUUUUCGCAAUGAAGCAAUGAAACUGGCAAUAAACAAAUGGCACAAACGGCAACGGAUGUGCAA-AAG-GAAGCAGAGAGCAAAA
((......))........(((((((((((((.((......))...)))))))))............(((((..((....))..)))))..-...-........)))).... ( -35.70)
>consensus
GCAGAUAAGCAGAGUAUAGCUCGCCAGUUUUCGCAAUGAAGCAAUGAAACUGGCAAUAAACAAAUGGCACAAACGGCAACGGAUGUGCAAAAAG_GAAGCAGAGAGCAAAA
((...(..((.(((.....)))(((((((((.((......))...)))))))))............(((((..((....))..)))))..........))..)..)).... (-32.78 = -32.40 +  -0.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:38 2006