Locus 5840

Sequence ID X_DroMel_CAF1
Location 15,102,151 – 15,102,261
Length 110
Max. P 0.797489
window9475

overview

Window 5

Location 15,102,151 – 15,102,261
Length 110
Sequences 5
Columns 112
Reading direction forward
Mean pairwise identity 87.96
Mean single sequence MFE -31.57
Consensus MFE -23.04
Energy contribution -22.88
Covariance contribution -0.16
Combinations/Pair 1.05
Mean z-score -2.06
Structure conservation index 0.73
SVM decision value 0.61
SVM RNA-class probability 0.797489
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15102151 110 + 22224390
UCCGGUGGCAUUUUGCGCCAUCGCAGCUGGAUCUUCAUUUUAUGCCCUUGCUGUUCGGUAAUUUGGCCAGAAUUUUACC-CCGCCG-CGUACAGUGAAACUUAUCUGAUCCA
..(((((((.......))))))).....(((((((((((.(((((..(((((....)))))...(((..(........)-..))))-)))).))))))........))))). ( -31.00)
>DroSec_CAF1 14939 112 + 1
UCCGGUGGCAUUUUGCGCCAUCGCAUCUGGAUCUUCAUUUUAUGCCCUUGCUGUUCGGUAAUUUGGCCAGAAUUUGGCCCCCGCCGCCGUACAGUGAAACUUUUCUGAUCCA
..(((((((.......))))))).....(((((................(((((.((((.....((((((...))))))......)))).)))))(((....))).))))). ( -36.20)
>DroSim_CAF1 19228 112 + 1
UCCGGUGGCAUUUUGCGCCAUCGCAGCUGGAUCUUCAUUUUAUGCCCUUGCUGUUCGGUAAUUUGGCCAGAAUUUUGCCCCCGCCGCCGUACAGUGAAACUUUUCUGAUCCA
..(((((((.......))))))).....(((((................(((((.((((.....(((.........)))......)))).)))))(((....))).))))). ( -30.80)
>DroEre_CAF1 22692 95 + 1
UCCGGUGGCAUUUUGCGCCAUCGCAGCUGGAUCUUCAUUUUAUGCCCUUGCUGUUCGGUAAUUUGGCCGGA-----------------AUACAGUACAACUUUUCAGAUCCA
..(((((((.......))))))).....((((((........((....(((((((((((......))))).-----------------..)))))))).......)))))). ( -27.16)
>DroYak_CAF1 20103 108 + 1
UCCGGUGGCAUUUUGCGCCAUCGCAGCUGGAUCUUCAUUUUAUGCCCUUGCUGUUCGGCAAUUUGGCCACAAUUUUGCCCCUG----CAUACAGUAUAACUUAUCAGAUCCA
..(((((((.......))))))).....((((((.....((((((...(((.....(((((.(((....)))..)))))...)----))....))))))......)))))). ( -32.70)
>consensus
UCCGGUGGCAUUUUGCGCCAUCGCAGCUGGAUCUUCAUUUUAUGCCCUUGCUGUUCGGUAAUUUGGCCAGAAUUUUGCCCCCGCCG_CGUACAGUGAAACUUUUCUGAUCCA
..(((((((.......))))))).....(((((..........(((.(((((....)))))...))).........................((.....)).....))))). (-23.04 = -22.88 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:36 2006