Locus 5838

Sequence ID X_DroMel_CAF1
Location 15,101,216 – 15,101,336
Length 120
Max. P 0.712554
window9471

overview

Window 1

Location 15,101,216 – 15,101,336
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 83.05
Mean single sequence MFE -39.70
Consensus MFE -25.32
Energy contribution -25.52
Covariance contribution 0.20
Combinations/Pair 1.08
Mean z-score -2.00
Structure conservation index 0.64
SVM decision value 0.38
SVM RNA-class probability 0.712554
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15101216 120 - 22224390
AUACCGCCCCACUUUCGCCGGACACAUCUGCUCCGUGCCCGAAAAACCCGGAGACCCAGUGGAAAAGCCCUGACGCACAUACAUAUGUUUGUACAUGGUCGUGGCGGAGGCGGAGGUGAA
....((((((.((((((((((((.(((.......(((((((.......))).....(((.((.....)))))..)))).((((......)))).)))))).))))))))).)).)))).. ( -43.30)
>DroSec_CAF1 14018 120 - 1
AUACCGCCCCACUUUCGCCGGACACAUCUGCUCCGUGCCCGAAAAACCCGGAGACCCAGUGGAAAAGCCCUGACGCACAUACAUAUGUAUGUACAUGAACGUCUCGGAGGUGGAGGUGAA
....((((((((((((((((((((....)).)))).))............(((((.(((.((.....)))))..(.((((((....)))))).)......))))))))))))).)))).. ( -43.20)
>DroSim_CAF1 18316 120 - 1
AUACCGCCCCACUUUCGCCGGACACAUCUGCUCCGUGCCCGAAAAACCCGGAGACCCAGUGGAAAAGCCCUGACGCACAUACAUAUGUAUGUACAUGAACGUGGCGGAGGUGGAGGUGAA
....((((((((((((((((((((....)).)))(((((((.......))).....(((.((.....)))))..)))).(((((....))))).........))))))))))).)))).. ( -44.70)
>DroEre_CAF1 21788 106 - 1
AUACCGCCCCACUUUCGCCGGACACAUCUGCUCCGUGCCCGAAAAACCCGGCGACCCAGUGAGGAAGCUCUGAUGUACAUACAU--------ACAUGGACGUG------GUGGAGGUGAA
.((((.((((((..(((((((.....((.((.....))..)).....))))))).((((((((....)))..((((....))))--------)).)))..)))------).)).)))).. ( -35.70)
>DroYak_CAF1 19204 93 - 1
AUACCGCCCCACUUUCGCCGGACACAUCUGGUCCGUGCCCGGAAAACCCGGAGACCCAGUGAAAAGGCACUGACGUACAUACA---------------------------UGGAGGUGAA
....(((((((.....((((((....))))))..((((((((.....)))).....(((((......)))))..)))).....---------------------------))).)))).. ( -31.60)
>consensus
AUACCGCCCCACUUUCGCCGGACACAUCUGCUCCGUGCCCGAAAAACCCGGAGACCCAGUGGAAAAGCCCUGACGCACAUACAUAUGU_UGUACAUGAACGUG_CGGAGGUGGAGGUGAA
.........(((((((((((((((....)).)))(((((((.......))).....(((.(......).)))..))))..............................)))))))))).. (-25.32 = -25.52 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:33 2006