Locus 5837

Sequence ID X_DroMel_CAF1
Location 15,100,418 – 15,100,531
Length 113
Max. P 0.848661
window9470

overview

Window 0

Location 15,100,418 – 15,100,531
Length 113
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 84.02
Mean single sequence MFE -25.80
Consensus MFE -16.76
Energy contribution -17.68
Covariance contribution 0.92
Combinations/Pair 1.10
Mean z-score -2.33
Structure conservation index 0.65
SVM decision value 0.78
SVM RNA-class probability 0.848661
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15100418 113 + 22224390
UCCCAUAUUUUCUGCUUUACCCAGAUGUCGUGGGAUCAUUCGCCGCAUUCAUCAUCGCCUUCUUUUCAAUUUGAAUUCUGGCU-UCUUUCCACCCCAGGAUCUGU------GGAUCUGUA
..(((((..(((((.........((((..((((((....)).))))...))))...(((.....(((.....)))....))).-...........)))))..)))------))....... ( -26.90)
>DroSec_CAF1 13247 113 + 1
GCCCAUAUUUCCUGCUUUACCCAGAUGUCGUGGGAUCAUCCCCCGCAUCCAUCAUAGCCUCCUUUUCAAUUUGAAUUCUGGCU-UCUUUCCACCCCAGGAUCUGU------GGAUCUGUA
..(((((..(((((.........((((..(((((.......)))))...))))..((((.....(((.....)))....))))-...........)))))..)))------))....... ( -31.00)
>DroSim_CAF1 17531 113 + 1
GCCCAUAUUUCCUGCUUUACCCAGAUGUCGUGGGAUCAUCCCCCGCAUCCAUCAUUGCCUCCUUUUCAAUUUGAAUUCUGGCU-UCUUUCCACCCCAGGAUCUGU------GGAUCUGUA
..(((((..(((((.........((((..(((((.......)))))...))))...(((.....(((.....)))....))).-...........)))))..)))------))....... ( -30.30)
>DroEre_CAF1 21053 111 + 1
UCCCUAACUUCCUGUUUCAUCCAGAUGUUGUGUGAUCAUCGCCCCCAUCCAUCAUCGCCU--UUUUCAAUUUGAGUUCUGGCU-UCUUUCCGCCCCAGGAUCUGU------GCAUCUGUA
......((.(((((.........((((.((..((...........))..)).))))(((.--..(((.....)))....))).-...........)))))...))------......... ( -18.40)
>DroYak_CAF1 18385 120 + 1
UCACAUUUUUCCUGUCCUAUUCAGAAGUCGUGGGAUCACUCACCGCAUACAUCAUCGCCUCCUUAUCAAUUUGAAUGCUGGCUUUCGUUCUGCCCCAGGAUCUUUGAAUUUGUAUCUGUA
..(((..(((...(((((...(((((((.(((((....))))).))..........(((..(...((.....))..)..))).....)))))....)))))....)))..)))....... ( -22.40)
>consensus
UCCCAUAUUUCCUGCUUUACCCAGAUGUCGUGGGAUCAUCCCCCGCAUCCAUCAUCGCCUCCUUUUCAAUUUGAAUUCUGGCU_UCUUUCCACCCCAGGAUCUGU______GGAUCUGUA
.........(((((.........((((..(((((.......)))))...))))...(((.....(((.....)))....))).............))))).................... (-16.76 = -17.68 +   0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:32 2006