Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 15,098,238 – 15,098,336 |
Length | 98 |
Max. P | 0.691217 |
Location | 15,098,238 – 15,098,336 |
---|---|
Length | 98 |
Sequences | 4 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 79.72 |
Mean single sequence MFE | -33.40 |
Consensus MFE | -19.24 |
Energy contribution | -18.80 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.14 |
Mean z-score | -2.04 |
Structure conservation index | 0.58 |
SVM decision value | 0.33 |
SVM RNA-class probability | 0.691217 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15098238 98 - 22224390 AUGAAUAAAUACACCG-GUGUCCACUUCAGUCCACUGCG--GACACCUUCGCUGCGGUGUCCUGGACCA--GGACCUGUCCGCCGGACUCGAUUCGAUUCGCU---------------- .(((((.......(((-(((..((..((.(((((....(--((((((........))))))))))))..--.))..))..)))))).....))))).......---------------- ( -34.90) >DroSim_CAF1 15419 98 - 1 AUGAAUAAAUAUACCG-GUGUCCACUUCAGUCCACUACG--GACACCUUCGCUGCGGUGUCCUGGACCA--GGACCUGUCCGCCGGACUCGAUUCGAUUCGCU---------------- .(((((.......(((-(((..((..((.(((((....(--((((((........))))))))))))..--.))..))..)))))).....))))).......---------------- ( -34.90) >DroEre_CAF1 18517 101 - 1 AUGCAUAAAUAUACCGGCGGUCCACUUCGGUCCACUCCGCAGAUACCUUCGCUCCGGUGUCCUGGACUA--GAACCUGACCCCCGGAGUCAAUUCCAUUCCAU---------------- .............((((.((((...(((((((((.......((((((........)))))).)))))).--)))...)))).)))).................---------------- ( -28.40) >DroYak_CAF1 16030 116 - 1 AUGAAUAAAUAUACCG-AGGUCCACUUCAGUCCACACCG--GACACCUUCGCUGCGGUGUCCUGGACCAGAGAACCUGUUCCCCGGAUUCUAUUCGAUUCGAUUGGAUUCGAGAGGCGA ................-((((...(((..(((((....(--((((((........))))))))))))..))).))))((..(.(((((((...(((...)))..))))))).)..)).. ( -35.40) >consensus AUGAAUAAAUAUACCG_GGGUCCACUUCAGUCCACUCCG__GACACCUUCGCUGCGGUGUCCUGGACCA__GAACCUGUCCCCCGGACUCGAUUCGAUUCGAU________________ .............(((.(((..((.(((.(((((.......((((((........)))))).)))))....)))..))..))))))................................. (-19.24 = -18.80 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:28 2006