Locus 5833

Sequence ID X_DroMel_CAF1
Location 15,097,346 – 15,097,438
Length 92
Max. P 0.664033
window9465

overview

Window 5

Location 15,097,346 – 15,097,438
Length 92
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 79.27
Mean single sequence MFE -28.98
Consensus MFE -19.83
Energy contribution -19.83
Covariance contribution 0.00
Combinations/Pair 1.08
Mean z-score -1.34
Structure conservation index 0.68
SVM decision value 0.28
SVM RNA-class probability 0.664033
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15097346 92 + 22224390
GU------------------------CCUGCAG---UCCUGCAG-UCCUGCAGUCCCUCGGGCAACGCGUCGUAUGCGCAAUAAAUAAAUCUGUCGUAAUUAAAACGCGCCCUCUGCGAC
..------------------------..(((((---..(((((.-...)))))......((((...((((..((((((((...........)).))))..))..)))))))).))))).. ( -25.90)
>DroPse_CAF1 23173 94 + 1
GU------------------------GUAGAUGAAAGUGGGUGGUUGCUACGG--ACACGGGCACCGCGUCGUAUGCGCAAUAAAUAAAUCUGGCGUAAUUAAAACGCGCCCUCUGCGAC
.(------------------------(((((.....(((..((.......)).--.)))((((...((((.....))))..............((((.......)))))))))))))).. ( -28.10)
>DroSec_CAF1 10363 92 + 1
GU------------------------CCCGCAG---UCCUGCAG-UCCUGCAUUCCCUCGGGCAACGCGUCGUAUGCGCAAUAAAUAAAUCUGUCGUAAUUAAAACGCGCCCUCUGCGAC
..------------------------..(((((---...((((.-...)))).......((((...((((..((((((((...........)).))))..))..)))))))).))))).. ( -25.10)
>DroSim_CAF1 14545 92 + 1
GU------------------------CCCGCAG---UCCUGCAG-UCCUGCAUUCCCUCGGGCAACGCGUCGUAUGCGCAAUAAAUAAAUCUGUCGUAAUUAAAACGCGCCCUCUGCGAC
..------------------------..(((((---...((((.-...)))).......((((...((((..((((((((...........)).))))..))..)))))))).))))).. ( -25.10)
>DroYak_CAF1 15148 116 + 1
GUCCUGCAGUUUUGCCGUUUUGCAAUCCUGCAG---UCCUGCAG-UCCUGCAGUCCCUCGGGCAACGCGUCGUAUGCGCAAUAAAUAAAUCUGUCGUAAUUAAAACGCGCCCUCUGCGAC
(((((((((..((((.(..(((((....)))))---..).))))-..))))))......((((...((((..((((((((...........)).))))..))..)))))))).....))) ( -37.20)
>DroPer_CAF1 49978 94 + 1
GU------------------------GUAGAUGAAAGUGGGUGGUUGCUACAG--CCACGGGCACCGCGUCGUAUGCGCAAUAAAUAAAUCUGGCGUAAUUAAAACGCGCCCUCUGCGAC
.(------------------------(((((.....((((.((.......)).--))))((((...((((.....))))..............((((.......)))))))))))))).. ( -32.50)
>consensus
GU________________________CCAGCAG___UCCUGCAG_UCCUGCAGUCCCUCGGGCAACGCGUCGUAUGCGCAAUAAAUAAAUCUGUCGUAAUUAAAACGCGCCCUCUGCGAC
.............................((((.......((((...))))........((((...((((..((((((((...........)).))))..))..)))))))).))))... (-19.83 = -19.83 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:27 2006