Locus 5831

Sequence ID X_DroMel_CAF1
Location 15,082,033 – 15,082,138
Length 105
Max. P 0.762782
window9462

overview

Window 2

Location 15,082,033 – 15,082,138
Length 105
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 75.84
Mean single sequence MFE -42.40
Consensus MFE -25.50
Energy contribution -27.75
Covariance contribution 2.25
Combinations/Pair 1.11
Mean z-score -1.84
Structure conservation index 0.60
SVM decision value 0.51
SVM RNA-class probability 0.762782
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15082033 105 + 22224390
CUGAACUGGCCAGCAAAUUGCGGCGAUAUUACACACAAGUGCGCUGGGAUUGGCAGGGCACAAA--GUGGGCUGCCGGCCAGUCG---------UCCUGGCCACUGG----ACUGUCCUC
..((.((((((....((((.(((((.((((.......))))))))).))))(((((..(((...--)))..)))))))))))))(---------(((........))----))....... ( -40.70)
>DroAna_CAF1 34722 119 + 1
CGGCCCUGGCCAGCAAAUUGUGGCAAUAUUACACACAAGUGUGCUCCGAUUGCCGGAACAGAGAUAGUUGGC-ACAGGCCAGCAAGGAAGGAGGCUCCGACCACGCCAGUGGCUGGCCAC
((((((((((.......((.(((((((....((((....)))).....))))))).))........((((((-....))))))..((..((.....))..))..))))).)))))..... ( -46.40)
>DroSim_CAF1 29886 105 + 1
CUGAACUGGCCAGCAAAUUGCGGCGAUAUUACACACAAGUGUGCUGGGAUUGGCAGGACACAAA--CUGGGCUGUCGGCCAGUCG---------UCCUGGCCACUGG----ACUCUCCUC
......(((((.((.((((.((((......((((....)))))))).)))).))(((((....(--((((.(....).))))).)---------)))))))))..((----.....)).. ( -37.30)
>DroYak_CAF1 36019 109 + 1
UCGAACUGGCCAGCAAAUUGCGGCGAUAUUACACACAAGUGUGCUGCGAUUGGCAGGACACAAA--GUGGGCUGCCGGCCAGUCA---------UCCUGACCACGGACGACACUGUCCUC
..((.((((((....(((((((((......((((....)))))))))))))(((((..(((...--)))..))))))))))))).---------..........(((((....))))).. ( -45.20)
>consensus
CUGAACUGGCCAGCAAAUUGCGGCGAUAUUACACACAAGUGUGCUGCGAUUGGCAGGACACAAA__GUGGGCUGCCGGCCAGUCA_________UCCUGACCACGGG____ACUGUCCUC
....(((((((....((((((((((......(((....)))))))))))))(((((..(((.....)))..))))))))))))..................................... (-25.50 = -27.75 +   2.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:25 2006