Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,650,325 – 1,650,437 |
Length | 112 |
Max. P | 0.500000 |
Location | 1,650,325 – 1,650,437 |
---|---|
Length | 112 |
Sequences | 3 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 87.95 |
Mean single sequence MFE | -48.69 |
Consensus MFE | -34.59 |
Energy contribution | -36.93 |
Covariance contribution | 2.34 |
Combinations/Pair | 1.09 |
Mean z-score | -2.08 |
Structure conservation index | 0.71 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1650325 112 - 22224390 AGUGAUGCUGCUGGGUCGCGGAGCAGCAGUGCAAUGCCAUUGUGUUGUGGAUGGAUACGUUGCGUCUCUGCCUCUCUGAAGGGGCAGACGUGCCACCCACCCCAUCACAGCA .((((((..(.(((((.(((..(((((.((((....((((......))))...).))))))))..)(((((((((....)))))))))...)).))))))..)))))).... ( -46.60) >DroEre_CAF1 16810 108 - 1 AGUGAUGCUGCUGGGUCGCGGAGCAGCAGUGCAAUGCCAUUGUGUUGUG----GAUACGUUGCGUCGCUGCUCUGCGGAAGGGGCAGACGAGCCACCCACCCCGGCCCAACC .........((((((((((((((((((..(((((((((((......)))----)...)))))))..))))))))))))..(((((......))).))...))))))...... ( -53.60) >DroYak_CAF1 15644 108 - 1 AGUGAUGCUGCUGGGUCGCGGAGCAGCAGUGCAAUGCCAUUGUGUUGUG----GAUACGUUGCGUCGCCUCUCUGCGGAAGGGGCAGACAUUCCACCCACCCCAGCCCAGCC .........((((((((((((((..((..(((((((((((......)))----)...)))))))..))..)))))))...((((...............)))).))))))). ( -45.86) >consensus AGUGAUGCUGCUGGGUCGCGGAGCAGCAGUGCAAUGCCAUUGUGUUGUG____GAUACGUUGCGUCGCUGCUCUGCGGAAGGGGCAGACGUGCCACCCACCCCAGCCCAGCC ......(((((((((((((((((((((..(((((((.....................)))))))..))))))))))))..(((((......))).))...)))))..)))). (-34.59 = -36.93 + 2.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:31 2006