| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 15,076,192 – 15,076,309 |
| Length | 117 |
| Max. P | 0.712310 |
| Location | 15,076,192 – 15,076,309 |
|---|---|
| Length | 117 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 79.78 |
| Mean single sequence MFE | -23.82 |
| Consensus MFE | -11.80 |
| Energy contribution | -13.67 |
| Covariance contribution | 1.87 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.09 |
| Structure conservation index | 0.50 |
| SVM decision value | 0.38 |
| SVM RNA-class probability | 0.712310 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15076192 117 - 22224390 AAGCUGUCAUUUAAAUAUAUAAAAACUAAUUUGCUGAAUA-GCGUGCAGAUCAUUUUAAUUAAAUAUUGGCCAAGGGAAAC-CGCAAACUUAUCAGCAGAAUUUAAAUGCCCGCUUCAA- ((((.(.(((((((((.............((((((((..(-(..(((.(..((..............))..)..((....)-))))..))..))))))))))))))))).).))))...- ( -28.55) >DroSec_CAF1 37411 118 - 1 AUGCUGUCAUUUAGAUAUAUAACAACUAAU-UGCUGAAGA-GCGUGCAGAUCAUUUUAAUUAAAUAUAGGCCAAGGGAAACCCGCAAACUUAUCAGCAGAAUUUAAAUGCCUGCUUCAAA ..((.(.(((((((((...((.....)).(-((((((.((-(..(((.....((((.....)))).........((....)).)))..))).))))))).))))))))).).))...... ( -25.80) >DroSim_CAF1 23352 117 - 1 AAGCUGUCAUUUAAAUAUAUAAAAACUAAUUUGAUGAAGA-GCGUGCAGAUCAUUUUAAUUAAAUAUUGGCCAAGGGAAAC-CGCAAACUUAUCAGCAGAAUUUAAAUGCCUGCUUCAA- ((((.(.(((((((((.............((((.(((.((-(..(((.(..((..............))..)..((....)-))))..))).))).))))))))))))).).))))...- ( -24.45) >DroEre_CAF1 28342 117 - 1 AUGCUGUCAUUUAAAUAUACUAUAAGAAGCUUGCUGAAUA-AAGUGCAGAUUAUUUUAAUUAAAUACGAGUCAAGGGAAAC-CGCAAACUUAUCAGCUGAAUUUAAAUGUCCGCUUGAA- ..((.(.(((((((((...((......))...(((((...-...(((.((((((((.....)))))...)))..((....)-))))......)))))...))))))))).).)).....- ( -25.10) >DroYak_CAF1 30319 100 - 1 AUGCUA-----UAAAUAUAGAAAAAAUGUAUUGCUAAGCACAUGUGUAGAUCAAUUUAAUUGAAUAUUGACCAAGGGAAAC-CGCAAACUUAUCAGCAGAAUUUAU-------------- .(((((-----(((.((((.......))))((((...(((....))).(.(((((..........))))).)..((....)-)))))..)))).))))........-------------- ( -15.20) >consensus AUGCUGUCAUUUAAAUAUAUAAAAACUAAUUUGCUGAAGA_GCGUGCAGAUCAUUUUAAUUAAAUAUUGGCCAAGGGAAAC_CGCAAACUUAUCAGCAGAAUUUAAAUGCCCGCUUCAA_ ..((.(.(((((((((.............((((((((.......(((.....((((.....)))).........((....).))))......))))))))))))))))).).))...... (-11.80 = -13.67 + 1.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:21 2006