Locus 5826

Sequence ID X_DroMel_CAF1
Location 15,074,272 – 15,074,368
Length 96
Max. P 0.736417
window9453

overview

Window 3

Location 15,074,272 – 15,074,368
Length 96
Sequences 3
Columns 118
Reading direction reverse
Mean pairwise identity 61.89
Mean single sequence MFE -23.37
Consensus MFE -9.11
Energy contribution -11.00
Covariance contribution 1.89
Combinations/Pair 1.16
Mean z-score -2.30
Structure conservation index 0.39
SVM decision value 0.44
SVM RNA-class probability 0.736417
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15074272 96 - 22224390
AGCUCUAUUUAAUAUUUAAAUGCCAAGUAUAGAGAAAAAC-AG-----------------UUACAAUUAGUAUUGUAAUUAGUUUUGCAUCACAAGCACAACCUAC----AAUACCUA
.(((.......((((((.......)))))).((..(((((-((-----------------(((((((....))))))))).)))))...))...))).........----........ ( -14.60)
>DroEre_CAF1 26362 108 - 1
AGCUCUAUUUGGUAUUUAAAAGCUAAGUAGAGAGAGAAAAAAGU--UGGAGGGUAUGUGUUUACAAUUACUGCUGCAAUUAGUGUUGCAACACAA-CACUACCUGCUA-------AUA
..(((((((((((........)))))))))))..........((--(((.(((((.(((((.........((.((((((....)))))).)).))-)))))))).)))-------)). ( -31.20)
>DroYak_CAF1 28251 112 - 1
GGUUCUAUUUAGUAUUUAAAUGCUAAUUAGAGAGGGGAAAAAGUGUUUUUAGGUGUGUUUUUAAAAUUAUUGUUGCAAUAAUUGUUACA-----C-GGGUAGCUACUAGGUAUACCUA
..(((((.(((((((....))))))).))))).................((((((((..(....((((((((...))))))))(((((.-----.-..)))))....)..)))))))) ( -24.30)
>consensus
AGCUCUAUUUAGUAUUUAAAUGCUAAGUAGAGAGAGAAAAAAGU__U____GGU_UGU_UUUACAAUUACUGUUGCAAUUAGUGUUGCA_CACAA_CACUACCUACUA___AUACCUA
..(((((((((((((....))))))))))))).........................................((((((....))))))............................. ( -9.11 = -11.00 +   1.89)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:17 2006