Locus 5825

Sequence ID X_DroMel_CAF1
Location 15,073,141 – 15,073,252
Length 111
Max. P 0.529579
window9452

overview

Window 2

Location 15,073,141 – 15,073,252
Length 111
Sequences 4
Columns 113
Reading direction forward
Mean pairwise identity 79.19
Mean single sequence MFE -38.13
Consensus MFE -19.00
Energy contribution -22.38
Covariance contribution 3.38
Combinations/Pair 1.04
Mean z-score -2.27
Structure conservation index 0.50
SVM decision value -0.01
SVM RNA-class probability 0.529579
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15073141 111 + 22224390
CCCAUGGCGAAAUGGUAGAGGAGACAGUC--GGAUUCGGCGUCGGAUUCUGAUACGUAUCCGAAACCAGAUCCGGAUCCGAUCCGAAUCCGGCCUAAAAACUUACGCCCCAAA
.....((((....(((...(....).(((--((((((((.(((((((((.(((..((.......))...))).))))))))))))))))))))......)))..))))..... ( -43.50)
>DroSim_CAF1 20578 111 + 1
CCCAUGGCGAAAUGGAAGAGGAGACAGGC--GGAUUCGGCGUCGGAUUCUGAUACGUAUCCGAAUCCAGAUCCGGAUCCGAUCCGAAUCCGGCCUAAAAACUUACACCCCAAA
.((((......))))(((.(....)((((--((((((((.(((((((((.(((.(.............)))).))))))))))))))))).)))).....))).......... ( -40.52)
>DroEre_CAF1 24988 106 + 1
CCCAUGGCGGAAUGGAAGAGGAGAGAGGC--GGAUUCGGCGUCGCAUUCUGAUACGUAUCCAGAUCCAGACUCAGAUC-----CGGAUCCGGCCUAAAAACUUGCCUCCCCAG
....(((.(((..((..(((.....((((--((((((((.(((....((((((.(.......))).))))....))))-----))))))).)))).....))).)))))))). ( -34.60)
>DroYak_CAF1 27462 101 + 1
CCCAUGGCGAAAUGGAAGAGGAGACAGGCUCGGAUAC----UCGAAUG--UGUACGUAUCGAGUUCCAGAUCCAGAUC----CCGGAUCCGGCCUAAAAACUUGCCGGUGU--
....((((((.........(....)(((((.(((.((----(((((((--....))).))))))))).(((((.....----..))))).)))))......))))))....-- ( -33.90)
>consensus
CCCAUGGCGAAAUGGAAGAGGAGACAGGC__GGAUUCGGCGUCGGAUUCUGAUACGUAUCCAAAUCCAGAUCCAGAUC____CCGAAUCCGGCCUAAAAACUUACCCCCCAAA
.((((......))))..(((.....((((..((((((((...((..........))...)))))))).....(((((((.....))))))))))).....))).......... (-19.00 = -22.38 +   3.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:16 2006