Locus 5822

Sequence ID X_DroMel_CAF1
Location 15,068,820 – 15,068,920
Length 100
Max. P 0.827471
window9448

overview

Window 8

Location 15,068,820 – 15,068,920
Length 100
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 78.59
Mean single sequence MFE -33.55
Consensus MFE -19.32
Energy contribution -19.57
Covariance contribution 0.25
Combinations/Pair 1.16
Mean z-score -1.99
Structure conservation index 0.58
SVM decision value 0.70
SVM RNA-class probability 0.827471
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15068820 100 - 22224390
UUUAAGCGGCAAACCGCAGCGAUGGGUG-ACUGGUCGGGUGGGU-------------GGUUGCCAAGUCGAGUUUACUUUAAUUUGACUUUCACUUAUACACUUA----UAUC--GCCGC
.....(((((...((((..((((((...-.)).)))).))))((-------------((.....((((((((((......))))))))))))))...........----....--))))) ( -32.90)
>DroSec_CAF1 29999 100 - 1
UUUAAGCGGCAAACCGCAGCGGUGGGCG-GCUGGUCGGGUGGGU-------------GGUUGCCAAGUGGAGUUUACUUUAAUUUGACUUUCACUUAUACACUUA----UAUC--GCCGU
.....((((....)))).((((((((((-((((.((....)).)-------------)))))))((((((((((...........))).))))))).........----...)--))))) ( -33.80)
>DroAna_CAF1 21868 116 - 1
UUUAAGCGGCAAACCGCAGCGGCGGAGGCAGCGGCCGGGGGGACGCCUGUAUAGACAGGUUGACAAGUCGAGUUUACUUUAAUUUGACUUUCACUUAUACGCCCA----UGACACGCCCC
.....((((....))))...((((..(((....)))(((.(...((((((....))))))(((.((((((((((......)))))))))))))......).))).----.....)))).. ( -43.30)
>DroSim_CAF1 16350 100 - 1
UUUAAGCGGCAAACCGCAGCGGUGGGCG-GCUGGUCGGGUGGGU-------------GGUUGCCAAGUCGAGUUUACUUUAAUUUGACUUUCACUUAUACACUUA----UAUC--GCCGC
.....((((....)))).((((((((((-((((.((....)).)-------------)))))))((((((((((......))))))))))...............----...)--))))) ( -37.00)
>DroEre_CAF1 20891 84 - 1
UUUAAGCGGCAAACCGCAGCGGUGGGU------------------------------GGUUGCCAAGUCGAGUUUACUUUAAUUUGACUUUUACUUAUACGCUUA----UAUC--GCAGC
..((((((((((.((((........))------------------------------)))))))((((((((((......))))))))))..........)))))----....--..... ( -27.00)
>DroYak_CAF1 23288 92 - 1
UUUAAGCGGCAAACCGCAGCGGUGGGUG-GCU-------------------------GGUUGCCAAGUCGAGUUUACUUUAAUUUGACUUUCACUUAUACACGUACACACAUC--GUCGC
.....((((....)))).((((((.(((-((.-------------------------....)))((((((((((......))))))))))................)).))))--))... ( -27.30)
>consensus
UUUAAGCGGCAAACCGCAGCGGUGGGUG_GCUGGUCGGGUGGGU_____________GGUUGCCAAGUCGAGUUUACUUUAAUUUGACUUUCACUUAUACACUUA____UAUC__GCCGC
.....(((((...((((....)))).......................................((((((((((......)))))))))).........................))))) (-19.32 = -19.57 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:12 2006