Locus 5820

Sequence ID X_DroMel_CAF1
Location 15,067,229 – 15,067,331
Length 102
Max. P 0.567547
window9446

overview

Window 6

Location 15,067,229 – 15,067,331
Length 102
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 84.57
Mean single sequence MFE -30.52
Consensus MFE -23.36
Energy contribution -23.95
Covariance contribution 0.59
Combinations/Pair 1.11
Mean z-score -1.81
Structure conservation index 0.77
SVM decision value 0.07
SVM RNA-class probability 0.567547
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15067229 102 - 22224390
CUCGCCGCGCACGCAACACACGCGCGAUUAGCAGCAAUUUGUACAGCAAUUAAGCUCAAGUGCAAUAAAAGUUAUUUGCACCGCAAAGUGCAGCGGGGAAAA------------------
.((.((((((((((.......))((((.((((......(((((((((......)))...)))))).....)))).))))........)))).)))).))...------------------ ( -33.00)
>DroSec_CAF1 28465 102 - 1
CUCGCCGCGCACGCAACACACGCGCGAUUAGCAGCAAUUUGUACAGCAAUUAAGCUCAAGUGCAAUAAAAGUUAUUUGCAACGCAAAGUGCAGCGGGGAAAA------------------
.((.((((((((((.......))((((.((((......(((((((((......)))...)))))).....)))).))))........)))).)))).))...------------------ ( -33.00)
>DroAna_CAF1 20156 106 - 1
CUCACUCUGCACGCAGCUCACGCGCGAUUAGCAGCAAUUUGUUCGGCAAUUAAGCUCGAGUGCAAUAAAAGUUAUUUUCGCAGAAGGGCG-GGCGAGGGCCAACGAC-------------
....(((.((.(((.((....))((((.((((......(((((((((......)).)))..)))).....))))...))))......)))-.)))))..........------------- ( -26.20)
>DroSim_CAF1 14817 102 - 1
CUCGCCGCGCACGCAACACACGCGCGAUUAGCAGCAAUUUGUACAGCAAUUAAGCUCAAGUGCAAUAAAAGUUAUUUGCACCGCAAAGUGCAGCGGGGAAAA------------------
.((.((((((((((.......))((((.((((......(((((((((......)))...)))))).....)))).))))........)))).)))).))...------------------ ( -33.00)
>DroEre_CAF1 19396 101 - 1
CUCGGCUCGCACGCAACACACGCGCGAUUAGCAGCAAUUUGUACAGCAAUUAAGUUCAAGUGCAAUAAAAGUUAUUUGCACCGCAAAGUGCAGCGGGGAAA-------------------
(((.(((.((((((.......))((((.((((......(((((((((......)))...)))))).....)))).))))........))))))).)))...------------------- ( -28.30)
>DroYak_CAF1 21818 120 - 1
CUCGCCACGCACGCAACCCACGCGCGAUUAGCAGCAAUUUGUACAGCAAUUAAGCUCAAGUGCAAUAAAAGUUAUUUGCACCGCAAAGUGCAGCGGGUAAAAAAGAGGAAAGGGGUGUAA
........((((.(...((....((((.((((......(((((((((......)))...)))))).....)))).)))).((((........))))..........))....).)))).. ( -29.60)
>consensus
CUCGCCGCGCACGCAACACACGCGCGAUUAGCAGCAAUUUGUACAGCAAUUAAGCUCAAGUGCAAUAAAAGUUAUUUGCACCGCAAAGUGCAGCGGGGAAAA__________________
(((((...((((((.......))((((.((((......(((((((((......)))...)))))).....)))).))))........)))).)))))....................... (-23.36 = -23.95 +   0.59)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:10 2006