Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,647,950 – 1,648,055 |
Length | 105 |
Max. P | 0.848177 |
Location | 1,647,950 – 1,648,055 |
---|---|
Length | 105 |
Sequences | 4 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 91.75 |
Mean single sequence MFE | -22.35 |
Consensus MFE | -21.00 |
Energy contribution | -21.00 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.08 |
Mean z-score | -1.60 |
Structure conservation index | 0.94 |
SVM decision value | 0.78 |
SVM RNA-class probability | 0.848177 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1647950 105 - 22224390 UAUGUAGUUUCAUUCUUGUUCCGCAUGUUUCAUGUGCAACUUUGAGUACCUGUGCGUCGAAUGAUGCAUUGUAUUCCUGUCUUCCCAUCUUCCCGUCUUCCCAUC .................(((.((((((...)))))).)))...((((((..(((((((....))))))).))))))............................. ( -20.90) >DroSec_CAF1 12932 97 - 1 UAUGUAGUUUCAUUCUUGUUCCGCAUGUUUCAUGUGCAACUUUGAGUACCUGUGCGUCGAAUGAUGCAUUGUAUUCCUGUCUU--------CCCGUCUUCCCAUC .................(((.((((((...)))))).)))...((((((..(((((((....))))))).)))))).......--------.............. ( -20.90) >DroEre_CAF1 14497 105 - 1 UAUGUAGUUUCAUUCUUGUUCCGCAUGUUUCAUGUGCAACUUUGAGUACCUGUGCGUCGAAUGAUGCAUUGUAUUCCUGUAUUCCUGUAUUCCUGUCUUCCUGCC ...((((..........(((.((((((...)))))).)))...((((((..(((((((....))))))).))))))........................)))). ( -23.60) >DroYak_CAF1 13273 105 - 1 UAUGUAGUUUCAUUCUUGUUCCGCAUGUUUCAUGUGCAACUUUGAGUACCUGUGCGUCGAAUGAUGCAUUGUAUUCCUGUAUUCCUGUAUGCCUGUCUUCCUGCC ...((((..........(((.((((((...)))))).)))...((((((..(((((((....))))))).))))))..((((......))))........)))). ( -24.00) >consensus UAUGUAGUUUCAUUCUUGUUCCGCAUGUUUCAUGUGCAACUUUGAGUACCUGUGCGUCGAAUGAUGCAUUGUAUUCCUGUAUUCCUGUAUUCCCGUCUUCCCACC ...((((..........(((.((((((...)))))).)))...((((((..(((((((....))))))).))))))........................)))). (-21.00 = -21.00 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:30 2006