Locus 5818

Sequence ID X_DroMel_CAF1
Location 15,065,225 – 15,065,324
Length 99
Max. P 0.550342
window9441

overview

Window 1

Location 15,065,225 – 15,065,324
Length 99
Sequences 3
Columns 106
Reading direction forward
Mean pairwise identity 78.26
Mean single sequence MFE -15.40
Consensus MFE -11.40
Energy contribution -11.57
Covariance contribution 0.17
Combinations/Pair 1.00
Mean z-score -1.32
Structure conservation index 0.74
SVM decision value 0.03
SVM RNA-class probability 0.550342
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15065225 99 + 22224390
AUGCCACUUGGCUAUUUUAUGAAUAUUUCAUAUUUAUGAAUAUACUAUACUAUACUUCACAUAAAAAAUAUGAAUACCACUCAAUUUUAGAGUCC-------GGAA
..(((....)))..............(((((((((.((((((((......)))).))))......)))))))))..((((((.......))))..-------)).. ( -14.10)
>DroSec_CAF1 26491 94 + 1
AUGCCACUUGGCUAUUUUAUGAAUAUUUCAUAUUUAUGAAUAUACUACUUUUUCAUUCGU-UCAAUAAUA-----------GAAUCUUAGAGUCCGGAUUCCGGAA
..(((....)))...(((((((((((...))))))))))).......((((...((((..-.........-----------))))...))))(((((...))))). ( -17.80)
>DroSim_CAF1 12881 87 + 1
AUGCCACUUGGCUAUUUUAUGAAUAUUUCAUAUUUAUGAAUAUACUACAUUUUCAUUCGA-UCAAUAAUG-----------GAAUCUUAGAGUCC-------GGAA
......((.((((..(((((((((((...)))))))))))....(((...(((((((...-.....))))-----------)))...))))))).-------)).. ( -14.30)
>consensus
AUGCCACUUGGCUAUUUUAUGAAUAUUUCAUAUUUAUGAAUAUACUACAUUUUCAUUCGA_UCAAUAAUA___________GAAUCUUAGAGUCC_______GGAA
..(((....)))...(((((((((((...)))))))))))....................................................((((.....)))). (-11.40 = -11.57 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:06 2006