Locus 5815

Sequence ID X_DroMel_CAF1
Location 15,060,794 – 15,060,913
Length 119
Max. P 0.514837
window9436

overview

Window 6

Location 15,060,794 – 15,060,913
Length 119
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 90.42
Mean single sequence MFE -20.83
Consensus MFE -15.61
Energy contribution -15.89
Covariance contribution 0.28
Combinations/Pair 1.09
Mean z-score -1.55
Structure conservation index 0.75
SVM decision value -0.04
SVM RNA-class probability 0.514837
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15060794 119 + 22224390
CAACUUACCCGGCAAAUCCCACG-AAUAACUCAAAUACGACAGUUUGCAUUUCUUUUGCAUUUUCCCCUGGCUACCCUUGCUUAAACAAAUAUUCGUGGAAAUGCUCAGAAAUUUAUUUA
..........((((....(((((-((((............(((..((((.......)))).......)))((.......)).........)))))))))...)))).............. ( -20.40)
>DroSec_CAF1 22034 117 + 1
CAACUUACCCGGCAAAUCCCACGGAAUAACUCAAAUACGACAGUUUGCAUUUCUUUUGCAUUUUCCCCUUGCUAAC--UGCUUAAACAAAUAAUCGGGGAAAUGCUCAGAAAA-UAUUUA
...........((((((....((..............))...)))))).(((((...((((((((((...((....--.))(((......)))..))))))))))..))))).-...... ( -22.14)
>DroSim_CAF1 7897 117 + 1
CAACUUACCCGGCAAAUCCCACGGAAUAACUCAAAUACGACAGUUUGCAUUUCUUUUGCAUUUUCCCCUUGCUAAC--UGCUUAAACAAAUAAUCGAGGAAAUGCUCAGAAAA-UAUUAA
...........((((((....((..............))...)))))).(((((...((((((...(((((.....--((......))......)))))))))))..))))).-...... ( -16.34)
>DroEre_CAF1 13368 115 + 1
CAACUUACCCGGCAAAUCCCACG-AAUAACUCAAAUACGACAGUUUGCAUUUCUUUUGCAUU-UCUCCGUGCUUCC--UGCUUAAGCAAAUAAUCGGGAAAAUGCUAAGAAAG-UGUUUG
..........((......))...-.......(((((((....(....).((((((..(((((-(..(((.......--(((....)))......)))..)))))).)))))))-)))))) ( -24.32)
>DroYak_CAF1 14921 116 + 1
CAACUUACCCGGCAAAUCCCACG-AAUAACUCAAAUACGACAGUUUGCAUUUCUUCUGCAUUUUCCCCUUACAACC--AGCUUAAACAAAUAAUCGGGAAAAUGCUUAGAAAA-UAUGUG
...........((((((....((-.((.......)).))...)))))).(((((...((((((((((.........--.................))))))))))..))))).-...... ( -20.97)
>consensus
CAACUUACCCGGCAAAUCCCACG_AAUAACUCAAAUACGACAGUUUGCAUUUCUUUUGCAUUUUCCCCUUGCUACC__UGCUUAAACAAAUAAUCGGGGAAAUGCUCAGAAAA_UAUUUA
...........((((((....((..............))...)))))).(((((...((((((((((............................))))))))))..)))))........ (-15.61 = -15.89 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:02 2006