Locus 5813

Sequence ID X_DroMel_CAF1
Location 15,059,767 – 15,059,857
Length 90
Max. P 0.760860
window9429

overview

Window 9

Location 15,059,767 – 15,059,857
Length 90
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 82.93
Mean single sequence MFE -33.17
Consensus MFE -27.47
Energy contribution -28.33
Covariance contribution 0.86
Combinations/Pair 1.04
Mean z-score -1.75
Structure conservation index 0.83
SVM decision value 0.50
SVM RNA-class probability 0.760860
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15059767 90 - 22224390
AUCUGGCUGCGCAUCCGUCUCUGUCAUGCCAUUUGGCUGGCACUCUCGAGGCCUUAAGUGUGCAUGCAUUAUGCCAUAUGCAGUUGCAGU------------------------------
.......(((((((..((((((((((.(((....)))))))).....))))).....)))))))((((...(((.....)))..))))..------------------------------ ( -29.10)
>DroSec_CAF1 20980 90 - 1
AUCUGGCUGCGCAUCCGUCUCUGUCAUGCCAUUUGGCUGGCACUCUCGAGGCCUUAAGUGUGCAUGCAUUAUGCCAUGUGCAGUUGCAGU------------------------------
..((((((((((....((((((((((.(((....)))))))).....))))).....(((.(((((...)))))))))))))))..))).------------------------------ ( -32.10)
>DroAna_CAF1 14606 92 - 1
AUCU----GAGCAUCCGUCCCUGUCAUGCCAUUUGGCUGGCACUCUCGAGGCCUUAAGUGUGCAUGCAUUAUGCCAUGUGCAGCAGGAUUCCCC-AU-----------------------
....----....((((....((((((((.(((...((..((((.((..(....)..)).))))..))...))).)))).))))..)))).....-..----------------------- ( -24.70)
>DroSim_CAF1 6851 90 - 1
AUCUGGCUGCGCAUCCGUCUCUGUCAUGCCAUUUGGCUGGCACUCUCGAGGCCUUAAGUGUGCAUGCAUUAUGCCAUGUGCAGUUGCAGU------------------------------
..((((((((((....((((((((((.(((....)))))))).....))))).....(((.(((((...)))))))))))))))..))).------------------------------ ( -32.10)
>DroEre_CAF1 12330 120 - 1
AUCUGGCUGCGCAUCCGUCUCUGUCAUGCCAUUUGGCUGGCACUCUCGAGGCCUUAAGUGUGCAUGCAUUAUGCCAUGUGCAGUUGCAGUUGCAGUUGCAGUUGCAGUGGCAGUGGGAGU
.(((.(((((((((..((((((((((.(((....)))))))).....))))).....))))))).......((((((.((((..(((((......)))))..)))))))))))).))).. ( -47.50)
>DroYak_CAF1 13880 100 - 1
AUCUGGCUGCGCAUCCGUCUCUGCCAUGCCAUUUGGCUGGCACUCUCGAGGCCUUAAGUGUGCAUGCAUUAUGCCAUGUGCAGUUUUAGUUGUAGUUGCU--------------------
....((((((((....((((((((((.(((....)))))))).....))))).....(((.(((((...))))))))))))))))...............-------------------- ( -33.50)
>consensus
AUCUGGCUGCGCAUCCGUCUCUGUCAUGCCAUUUGGCUGGCACUCUCGAGGCCUUAAGUGUGCAUGCAUUAUGCCAUGUGCAGUUGCAGU______________________________
....((((((((((.((....(((((.(((....))))))))....)).(((....(((((....)))))..)))))))))))))................................... (-27.47 = -28.33 +   0.86)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:56:56 2006