Locus 5811

Sequence ID X_DroMel_CAF1
Location 15,058,102 – 15,058,204
Length 102
Max. P 0.568176
window9426

overview

Window 6

Location 15,058,102 – 15,058,204
Length 102
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 84.47
Mean single sequence MFE -30.05
Consensus MFE -25.07
Energy contribution -25.68
Covariance contribution 0.61
Combinations/Pair 1.14
Mean z-score -1.52
Structure conservation index 0.83
SVM decision value 0.07
SVM RNA-class probability 0.568176
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15058102 102 - 22224390
CUCCUUGUUGUUUGCAAUUUAACUUUGCUGUGAGCGAAGGCUCUUCAUGAGUUGGACCGAGCUUAUGUGCGCAAACACAUACAUAGAUACACUUCGGGAAA--A----------------
.(((((((.((((((.......((((((.....))))))((....((((((((......)))))))).)))))))))))......((......))))))..--.---------------- ( -29.50)
>DroSec_CAF1 19254 102 - 1
CUCCUUGUUGUUUGCAAUUUAACUUUGCUGUGAGCGAAGGCUCUUCAUGAGUUGGACCGAGCUUAUGUGCGCAAACACAUACAUAGAUACACUGCGGGAAA--A----------------
.(((((((.((((((.......((((((.....))))))((....((((((((......)))))))).)))))))))))....(((.....))).))))..--.---------------- ( -28.40)
>DroAna_CAF1 13377 119 - 1
CGCCCUGUUGUUUGCAAUUUAACUUUGCUGUGAGCGAAGGCUCUUCAUGAGUUGGCCCG-GCUUAUGUGCGCACACUGCUCGAAAAGUCGUGUUCGGGAGGCAGCCCAACAUUUAAGGAC
.....(((((.((((...(((((((......((((....)))).....)))))))((((-((......))(((((((........))).)))).))))..))))..)))))......... ( -33.80)
>DroSim_CAF1 5181 102 - 1
CUCCUUGUUGUUUGCAAUUUAACUUUGCUGUGAGCGAAGGCUCUUCAUGAGUUGGACCGAGCUUAUGUGCGCAAACACAUACAUAGAUACACUGCGGGAAA--A----------------
.(((((((.((((((.......((((((.....))))))((....((((((((......)))))))).)))))))))))....(((.....))).))))..--.---------------- ( -28.40)
>DroEre_CAF1 10758 97 - 1
CUCCUUGCUGUUUGCAAUUUAACUUUGCUGUGAGCGAAGGCUCUUCAUGAGUUGGACCAAGCUUAUGUGCGCAAACAC----AUAGAUACACUUCAGGG-A--A----------------
.(((((..(((((((.......((((((.....))))))((....((((((((......)))))))).))))))))).----...((......))))))-)--.---------------- ( -30.70)
>DroYak_CAF1 11906 98 - 1
CUCCUUGUUGUUUGCAAUUUAACUUUGCUGUGAGCGAAGGCUCUUCAUGAGUUGGACCGAGCUUAUGUGCGCAAACAC----AUAGAUACACUUCAGGAAA--A----------------
.(((((((.((((((.......((((((.....))))))((....((((((((......)))))))).))))))))))----)..((......))))))..--.---------------- ( -29.50)
>consensus
CUCCUUGUUGUUUGCAAUUUAACUUUGCUGUGAGCGAAGGCUCUUCAUGAGUUGGACCGAGCUUAUGUGCGCAAACACAUACAUAGAUACACUUCGGGAAA__A________________
.((((...(((((((.......((((((.....))))))((....((((((((......)))))))).)))))))))........((......))))))..................... (-25.07 = -25.68 +   0.61)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:56:53 2006