Locus 5810

Sequence ID X_DroMel_CAF1
Location 15,053,458 – 15,053,574
Length 116
Max. P 0.567444
window9425

overview

Window 5

Location 15,053,458 – 15,053,574
Length 116
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 84.78
Mean single sequence MFE -31.56
Consensus MFE -21.84
Energy contribution -21.96
Covariance contribution 0.12
Combinations/Pair 1.11
Mean z-score -1.70
Structure conservation index 0.69
SVM decision value 0.07
SVM RNA-class probability 0.567444
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15053458 116 + 22224390
GUUGUGUGCUUAAGCGUUUUAUUGUCUUUAAGCUUCAUUAAGUCAAAUGGCGCUAUCGUUUAGGGCAAAUGAAAAGCACAUCACGAAGC----ACCGAAAUUAGAGUGCUUCGAAUAGAC
((.((((((((.((((((...(((.(((...........))).)))..)))))).((((((.....)))))).)))))))).))(((((----(((.......).)))))))........ ( -34.80)
>DroSec_CAF1 9283 116 + 1
GUUGUGUGCUUAAGCGUUUUAUUGUCUUUAAGCUUCAUUAAGUCAAAUGGCGCUAUCGUUUAGAGCAAAUGAAAAGCACAUCACGAAGC----UCCGAAAUUAGAGUGCUUUGAAUAGCC
(((((((((((.((((((...(((.(((...........))).)))..)))))).((((((.....)))))).))))))....((((((----.((.......).).)))))).))))). ( -28.90)
>DroAna_CAF1 8950 103 + 1
GUUGUGUGCUUAAGCGUUUUAUUGUCUUUAAGCUUCAUUAAGUCAAAUGGCGAAAGCGUUUAGGGCAAAUGAGGAGCGCAUCGCGGAGCCAGAUCCGGAAUAC-----------------
((.((((((((...((((....((((((.((((..((((......))))((....))))))))))))))))..)))))))).))(((......))).......----------------- ( -30.90)
>DroEre_CAF1 8704 116 + 1
GUUGUGUGCUUAAGCGUUUUAUUGUCUUUAAGCUUCAUUAAGUCAAAUGGCGCUGUCGUUUAGCGCAAAUGAAAAGCACAUCACGAAGC----GCCGAACUUAAAGCGCCUCGAAUGGCC
((.((((((((...(((((..(((.(((...........))).)))...((((((.....)))))))))))..)))))))).))((.((----((..........)))).))........ ( -32.40)
>DroYak_CAF1 9975 116 + 1
GUUGUGUGCUUAAGCGUUUUAUUGUCUUUAAGCUUCAUUAAGUCAAAUGGCGCUAUCGUUUAGCCCAAAUGAAAAGCACAUCACGCAGC----GCCGAAAUUAAAGCGCUUCGAAUAGCC
(((((((((((.((((((...(((.(((...........))).)))..)))))).((((((.....)))))).))))))....((.(((----((..........))))).)).))))). ( -30.80)
>consensus
GUUGUGUGCUUAAGCGUUUUAUUGUCUUUAAGCUUCAUUAAGUCAAAUGGCGCUAUCGUUUAGCGCAAAUGAAAAGCACAUCACGAAGC____GCCGAAAUUAAAGCGCUUCGAAUAGCC
((.((((((((.((((((...(((.(((...........))).)))..)))))).((((((.....)))))).)))))))).)).................................... (-21.84 = -21.96 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:56:52 2006