| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 15,052,579 – 15,052,674 |
| Length | 95 |
| Max. P | 0.755055 |
| Location | 15,052,579 – 15,052,674 |
|---|---|
| Length | 95 |
| Sequences | 3 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 57.75 |
| Mean single sequence MFE | -33.03 |
| Consensus MFE | -13.58 |
| Energy contribution | -13.20 |
| Covariance contribution | -0.38 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.90 |
| Structure conservation index | 0.41 |
| SVM decision value | 0.49 |
| SVM RNA-class probability | 0.755055 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15052579 95 - 22224390 AUGGACGAAGGCAGGAAAAUGUCAGUUGCCAGU-UGUGUGGAAUGGA---GGGUGGGGGCUGGAUAGCUGCCU--------UGGAUAGCUGUCCCCAAAC--GGGGGCA--------- .....(.(((((((.......((((((.(((.(-(............---)).))).))))))....))))))--------).)......((((((....--)))))).--------- ( -34.40) >DroAna_CAF1 8092 113 - 1 AUGGACGAAGGCAGGAAAAUGUCAGUUUCCAGACUGCCAGUCCUGGA---GGGUGGUGCCAAG--GGGUGCCAGGAGGUGCUAGGUGGUAGGUACUAGGAGGGGGAGUAGGAGCUCAG .........((((......))))((((((...(((.((..((((((.---......(((((..--.((..((....))..))...)))))....))))))..)).))).))))))... ( -37.60) >DroYak_CAF1 9050 86 - 1 AUGGACGAAGGCGGGCAAAUGUCAGUUGCCAGU-UGUGCGGAGGGCAAGUGGGCGGGG-----------GGCA--------UGGAUGGCUGUCCUU-AAC--GGGGGCA--------- .....(((((((((.((.(((((..(((((...-..(((.....)))....)))))..-----------))))--------)...)).))).))))-..)--)......--------- ( -27.10) >consensus AUGGACGAAGGCAGGAAAAUGUCAGUUGCCAGU_UGUGAGGAAUGGA___GGGUGGGG_C__G___G_UGCCA________UGGAUGGCUGUCCCUAAAC__GGGGGCA_________ .(((.....((((......)))).....))).......................((..((......))..))..................((((((......)))))).......... (-13.58 = -13.20 + -0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:56:51 2006