Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 15,052,157 – 15,052,257 |
Length | 100 |
Max. P | 0.993116 |
Location | 15,052,157 – 15,052,257 |
---|---|
Length | 100 |
Sequences | 3 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 78.57 |
Mean single sequence MFE | -23.60 |
Consensus MFE | -14.01 |
Energy contribution | -13.13 |
Covariance contribution | -0.88 |
Combinations/Pair | 1.23 |
Mean z-score | -3.07 |
Structure conservation index | 0.59 |
SVM decision value | 2.37 |
SVM RNA-class probability | 0.993116 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15052157 100 - 22224390 AGCCUCUCAUUUGGCACAUUUGUGGUGUGUGCUUUAUAUACCCCACAUAAAUAUGUAUGCUACCCUAUACCCUACCCUAUAUAUAUAUAUAUAGCUACUU .(((........)))((((.(((((.(((((.....))))).))))).....))))....................(((((((....)))))))...... ( -19.80) >DroSec_CAF1 7983 94 - 1 AGCCUCUCAUUUGGCUCGUUUGUGGUGUGUGCCUUAUAUACCCCACAUAAAUAUGUAUGCGCAAGCAUACACUACCCUAUAU------AUAAAGCUACUU ((((........)))).((((((((.(((((.....))))).)))).......(((((((....)))))))...........------...))))..... ( -27.20) >DroEre_CAF1 7566 93 - 1 AGCCUCUCAUUCGGCACAUUUGCGGUCUGUGCUUUAUAUACC-CACGUAAAUAUGUACGAGUAUGUGUGGGGUACCCACUAU------AUAUAGCUACUU (((.......((((((.((((((((..((((.....))))..-).))))))).))).)))(((((((((((...))))).))------)))).))).... ( -23.80) >consensus AGCCUCUCAUUUGGCACAUUUGUGGUGUGUGCUUUAUAUACCCCACAUAAAUAUGUAUGCGAAAGUAUACACUACCCUAUAU______AUAUAGCUACUU .(((........)))..((((((((((((((...))))))))....))))))..(((((......))))).............................. (-14.01 = -13.13 + -0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:56:50 2006