Locus 5806

Sequence ID X_DroMel_CAF1
Location 15,049,342 – 15,049,462
Length 120
Max. P 0.686601
window9420

overview

Window 0

Location 15,049,342 – 15,049,462
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 88.33
Mean single sequence MFE -24.50
Consensus MFE -19.79
Energy contribution -19.98
Covariance contribution 0.19
Combinations/Pair 1.14
Mean z-score -1.59
Structure conservation index 0.81
SVM decision value 0.32
SVM RNA-class probability 0.686601
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15049342 120 - 22224390
GGCCUGUUAUUUCAGGCCGCUUUCAUGUCAUUUUUCAAGUUUACACAAAAUAUUUCAAGUGUUUGAUGUCUUUUGCACCCGAAGCGCAUCAAUUUCCUUCUUCACGCCACCCAACACUUG
((((((......)))))).....................................((((((((((((((.(((((....))))).)))))).....................)))))))) ( -25.69)
>DroAna_CAF1 4799 111 - 1
GGGGUGUUAUUUCGGGCCGCUUUCAUGUCAUUUUUCAAGUUAACACAAAAUACUUCGAGUGUUUGAUGUCCUCCGCACCCGAAGCGCAUCAAUUUCCUCCUGC----CGCUCCAC-----
((((((...(((((((..((....((((((...(((((((...........)))).)))....)))))).....)).))))))).(((............)))----))))))..----- ( -25.30)
>DroEre_CAF1 5091 120 - 1
GGCCUGUUAUUUCAGGCCGCUUUCAUGUCAUUUUUCAAGUUUACACAAAAUAUUUCAAGUGUUUGAUGUCUUUUGCACCCGAAGCGCAUCAAUUUCCUCCUUCACGCCAUUCCACACACG
((((((......))))))((......................((((............))))(((((((.(((((....))))).))))))).............))............. ( -23.50)
>DroYak_CAF1 5751 120 - 1
GGCCUGUUAUUUCAGGCCGCUUUCAUGUCAUUUUUCAAGUUUACACAAAAUAUUUCAAGUGUUUGAUGUCUUUUGCACCCGAAGCGCAUCAAUUUUCUCCUUCACGCCAACCCACACAUU
((((((......))))))((......................((((............))))(((((((.(((((....))))).))))))).............))............. ( -23.50)
>consensus
GGCCUGUUAUUUCAGGCCGCUUUCAUGUCAUUUUUCAAGUUUACACAAAAUAUUUCAAGUGUUUGAUGUCUUUUGCACCCGAAGCGCAUCAAUUUCCUCCUUCACGCCACCCCACACAUG
((((((......))))))........................((((............))))(((((((.(((((....))))).)))))))............................ (-19.79 = -19.98 +   0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:56:48 2006